SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5330

Length: 1640 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5330

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0724 RNA-binding proteins (RRM domain)	-	-	3.00018e-42	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	protein	-	-	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	0.0	77%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	77%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A839

Fln msg: Distance to subject end: 89 aas, your sequence is shorter than subject: 306 - 396

Fln protein: MDSDHGKIFIGGISWDTSEERLKDYFGQYGQVVDVVIMKDRTTGRARGFGFVVFGDPSVADRVIQEKHTIDGRTVEAKRVVPRDEQQNVQRNSNMAGPRTKKIFVGGLAPTVTEDDFRKYFEQFGNITDVVVMYDHTTQRHRGFGFITYDSEDAVDKVLQQTFHQLKEKTVEVKRAIPKDMSPGNTRGSAGRGASFGAPYMQSYGPTPVGAYGTRPPIAGTGYPPYAAAPGYGPTGYGSTAGYGTSMNGGYGATPVYAAAAGYAGGAAGSYGAGFSNAPGSTTYGTGTAGYAATPVPAPGYGYASS

Protein Length: 307

Fln nts: CGAGGAGGAAGTTTGCGGATTAAGTTACTCCAAATTCCATTAATTCACCTCGTAAACCCTACTCGCATTCCATGGGAACAACTTTTACCCCCTTTAATGAAAGCACAAGCATGGTTTGAGTCGGTGAGGCCATTAATGACAGCAAGGGCAGTTTTCTTTTTAAGGGATTTTAGGGAAGGTATGTTCTTCTCAACGCTCGGGCTTGGGAAACTTATTTATATACGAGTCCCATGTGAGAGAGGTAGTATAGCGCCCGTCCGATCAGATGGCAGTAATTGAGTCCTGATCGTTGGATCTGGTGGAGACCTGTAGAAATTTTTTTATTATAAGTTAAGTTGGAGGGATGATCTCAGGTTTTCTCTGGGTTCTGTGATGTGTTTGTTTGTTGCCTCTGTCAAAGAGTCGCAATATAGCAAGCAGCAAAGGAACCCTTTTTGAGAAGGTGGGCGGAGGGGACTTTGGGTGATTTTGCCAGATCTGGCGGCCCATCTCCTTTTTTGGGTTACCCGACCGCATCTCATGTAGGTGCGCGGCTCTGTTCTCGAATCTTTGGATATATCCTCTCACATATACATATTCTTTTTCTTCTTCTTTAGATTCAACCCTAATATGGGTTCCTTGCCCTGAGCAGTGTATATTTTAGAGGGTTTAAGAAGGGTTTTTATCCTCGAAGAAGGCAGTTTCGGGAGCGAAGCTTTTTTATTTTTATTTTGAAAGGAGCA_-_ATGGATTCTGATCATGGCAAGATTTTTATCGGAGGAATATCATGGGACACCTCTGAAGAGAGGCTCAAGGATTATTTCGGTCAATACGGCCAGGTGGTAGATGTTGTCATTATGAAAGACAGGACTACTGGTCGAGCAAGAGGCTTCGGCTTTGTGGTCTTTGGAGACCCTTCTGTTGCAGATCGAGTTATTCAGGAGAAGCACACTATCGACGGCAGAACAGTTGAAGCTAAAAGGGTTGTACCAAGGGATGAACAACAAAATGTTCAGAGGAATAGCAATATGGCAGGACCTAGGACTAAGAAGATTTTTGTTGGTGGGTTAGCACCCACTGTTACTGAGGATGACTTCAGAAAGTATTTTGAGCAGTTTGGTAATATAACAGATGTAGTTGTAATGTATGATCACACTACACAAAGGCATCGTGGTTTTGGGTTTATTACTTATGATTCGGAGGATGCAGTGGACAAAGTTCTTCAGCAGACATTTCACCAGCTCAAGGAAAAGACTGTGGAGGTGAAGCGGGCCATTCCCAAGGACATGTCTCCAGGAAATACAAGAGGTTCTGCAGGACGTGGAGCTAGTTTTGGTGCACCATATATGCAAAGCTATGGACCAACTCCTGTTGGGGCTTATGGAACACGCCCGCCTATTGCAGGTACGGGATATCCTCCATATGCTGCAGCACCTGGCTATGGACCTACTGGGTATGGAAGTACAGCAGGGTATGGGACAAGTATGAATGGTGGATATGGTGCAACACCTGTATATGCAGCAGCTGCAGGCTATGCAGGAGGTGCAGCAGGATCTTATGGAGCTGGATTTAGCAATGCTCCTGGTAGCACTACGTATGGTACTGGAACTGCTGGTTATGCTGCTACTCCTGTACCTGCTCCTGGTTATGGATATGCAAGTAGT

Fln Alignment:

sp_v1.1_unigene5330___MDSDHGKIFIGGISWDTSEERLKDYFGQYGQVVDVVIMKDRTTGRARXXXXXXXXDPSVADRVIQEKHTIDGRTVEAKRVVPRDEQQNVQRNSNMAGPRTKKIFVGGLAPTVTEDDFRKYFEQFGNITDVVVMYDHTTQRHRGFGFITYDSEDAVDKVLQQTFHQLKEKTVEVKRAIPKDMSPGNTXXXXXXXXXXXXPYMQ-SYGPTPVGAYGTRPPI
D5A839______________MDSDHGKIFIGGISWDTSEDRLKDYFGNYGQVVDVVIMKDRTTGRARGFGFVVFGDPSVADRVIQEKHTIDGRAVEAKRVVPRDEQQNVQRTSNMAGPRTKKIFVGGLAPTVTEDDFRKYFEQFGNITDVVVMYDHTTQRHRGFGFITYDSEDAVDKVLQQTFHQLKEKTVEVKRAIPKDMSPGNTRGSAGRGASYGAPYMQGGYGPTPVGAYGARPPI

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
191	12	87			0.992554
193	12		12	75	0.975346
194		87	12		0.992554
195			12	87	0.992554
196		87	12		0.992554
243	81			18	0.999994
244		18	72	9	0.999994
246			81	18	0.999994
247		18	81		0.999994
248	18		9	72	0.999994
252	72		27		1.0
345	90	10			0.90298
347			90	10	0.90298
348		10	90		0.90298
349	90		10		0.90298
353		10		90	0.90298
356		90		10	0.90298
357	90		10		0.90298
479		92	8		0.999718
480	92			8	0.999718
483		8		92	0.999718
489			91	8	0.999766
492		91		8	0.999807
500	10			78	0.999769
928	80		20		0.995493
1070			90	10	0.90298
1072	90		10		0.90298
1073			10	90	0.90298
1132	83		16		0.999991
1553			2	97	0.97849
1573		97		2	0.979771

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain