SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5327

Length: 1078 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5327

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	serine/threonine protein kinase, putative (EC:2.7.11.13)	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	serine threonine protein	-	-	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	61%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	61%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	61%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	61%
Blast2go	Protein kinase-like domain	IPR011009	-	61%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	61%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	61%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	61%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPF9

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 348 - 385

Fln protein: MCVECICMKCRMDVIESAESVNEFKLVRALGHGDMGTVYLATHVTSGKPVAMKVMSKELMQKKRSHKRARTEKEILQKLDYPFLPKLFTKFDSKNHSFLLMSYCSGGDLNTLRQKQKNGRFSESAARFYAAEVVLALEYLHQHGILYRDLKPENILLQADGHIMITDFDLSLIINNPRGECKTKDKSRFWHLNGRNEAAAYEQSHSFVGTEEYVAPEILWGKGHGIAVDWWAFGILVYEMVNGKTPFKGLTRKETFYNILCKEPPQLSQPSRPLQDLLQRLLVKEPTLRLGFKCGAQEIKNHEFFEGVRWDELEYVYRPPFVPLPFSFEHSCMVLDDNVHTIEMFEKF

Protein Length: 349

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGATTTAG_-_ATGTGTGTTGAGTGTATATGCATGAAGTGTAGGATGGACGTCATTGAATCCGCAGAGTCTGTGAACGAATTCAAGCTTGTCAGAGCGCTGGGCCATGGCGACATGGGGACTGTGTATCTGGCAACGCATGTGACCAGCGGGAAGCCTGTGGCCATGAAGGTAATGAGCAAGGAGCTTATGCAGAAGAAGAGGAGCCACAAAAGGGCGCGGACGGAGAAGGAGATTTTGCAGAAGCTGGACTATCCCTTCTTGCCCAAGCTTTTCACAAAATTTGACTCGAAAAACCACTCTTTCCTGCTCATGAGTTACTGCTCCGGAGGGGACCTCAATACGCTCAGGCAAAAGCAGAAGAACGGGAGGTTCTCCGAGTCTGCGGCCAGATTCTATGCAGCAGAAGTTGTGCTTGCACTAGAATATTTGCACCAGCATGGAATTTTGTACAGAGACTTGAAACCTGAAAACATATTGCTTCAAGCAGATGGGCATATCATGATCACTGATTTCGATCTCTCGCTTATCATCAACAATCCACGAGGAGAGTGTAAGACAAAGGATAAATCCAGGTTTTGGCATTTGAATGGCAGAAACGAAGCAGCAGCTTACGAGCAATCTCATTCGTTTGTAGGCACAGAAGAGTATGTTGCCCCAGAAATCTTGTGGGGCAAGGGCCATGGCATTGCAGTGGATTGGTGGGCTTTTGGCATATTGGTGTATGAGATGGTGAATGGGAAGACCCCGTTTAAGGGGTTGACTAGGAAAGAAACTTTTTACAACATATTATGCAAAGAGCCACCGCAGCTCTCACAACCTTCCAGACCCCTCCAAGACCTACTCCAACGATTGTTGGTGAAGGAGCCTACTCTTAGATTGGGATTCAAGTGTGGTGCTCAAGAGATTAAAAATCATGAATTCTTTGAGGGTGTTAGATGGGATGAGTTAGAATATGTGTATAGACCCCCTTTTGTTCCTCTTCCTTTCAGTTTTGAGCATTCGTGCATGGTATTGGATGATAATGTACATACAATTGAAATGTTTGAGAAATTTTT

Fln Alignment:

sp_v1.1_unigene5327___MKCRMDVIESAESVNEFKLVRALGHGDMGTVYLATHVTSGKPVAMKVMSKELMQKKRSHKRARTEKEILQKLDYPFLPKLFTKFDSKNHSFLLMSYCSGGDLNTLRQKQKNGRFSESAARFYAAEVVLALEYLHQHGILYRDLKPENILLQADGHIMITDFDLSLIINNPR------------GECKTKDKS---------------------------------RFWHLNGRNEAAAYEQSHSFVGTEEYVAPEILWGKGHGIAVDWWAFGILVYEMVNGKTPFKGLTRKETFYNILCKEXXXXXXXXXXXXXXXXXXXVKEPTLRLGFKCGAQEIKNHEFFEGVRWDELEYVYRPPFVPLPFSFEHSCMVLDDNVHTIEMFEKF
A9NPF9______________MEFRMNVIESAQSVDEFTPIRTLGHGDMGTVYLAKHMTSGKPVAMKVMSKELMQKKRSHKRAWMEKEILQKLDHPFLPKLFTKFESKNHSFLLMSYCSGGDLNTLRQRQKDRKFSESAARFYAAEVVLALEYLHQHGILYRDLKPENILLQADGHIMITDFDLSLMINNSQESRAKDSYRDQNGSCKKKTKSFLAKLNPGHVGAKDCMNASAMITTKQDDSAKETSFCHLDGRKE-SVYEQAHSFVGTEEYVAPEILWGKGHGIAVDWWAFGVLLYEMVYGKTPFKGCNRKETFYNILCKEPPQLSEHSSPLKDLLRRLLVKEPTLRLGFNSGAQEIKNHEFFEGVRWDELEYVSRPPFVPPPFSFEHSRIVMDDSVHTIEMFENF

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
908		14		85	0.993533
910	85			14	0.993533
911	85	14			0.993533
912	14		85		0.993533
915			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain