SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5302

Length: 505 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene5302
ATGGGGTGGTCACTCGGCAAATACTCAATCTTCGTGCATAATAGTGTGCAGTAAAACAGGAACATGCTTTTGAAGGATATGAAATGATGAACTGAGATGGGCGAATGTTCACGGTGGAATGCCAAGTATCGAATTGAACGGCTAATCTGCACGACTTGAACACCATTGTATTGAAAAATTCACAAGGGGAAACAAAATGAGTGGAGATACTGAAAAAGAGTTATTGAAGGCCCAAATCAGGGAGATGAAGGATATGTGGCAGGTGGAATTGACCCATAGACAAGCTCGAGAGGACCTTCTAGAATCAGAACTGTTGGAGGTGAAAGAATGTCTTTTGAGTGCTGGGGAAAGAGAGAAAAATGAAGTGGATCATCTTCGTCGGCGTGTCAAGACTGCAAATAATTTGTTGTCATTTTTGAAGTCCAAAGCAAGAATTATGTCTATGCCAGGTTTTGCATATACTGCATGTGGTATCAAATATGAAGAAGGTGTAGGATTTGTTGAC

Ace file of the UniGene sp_v1.1_unigene5302

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to putative calcium-dependent protein kinase CPK1 adapter protein 2 n=1 Tax=Vitis vinifera RepID=UPI000198302B	-	-	1.0e-17	46%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	46%
Blast2go	calcium-dependent protein kinase cpk1 adapter protein 2	-	-	2.76183e-19	69%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9SXM6

Fln msg: Distance to subject end: 239 aas, your sequence is shorter than subject: 103 - 344

Fln protein: MSGDTEKELLKAQIREMKDMWQVELTHRQAREDLLESELLEVKECLLSAGEREKNEVDHLRRRVKTANNLLSFLKSKARIMSMPGFAYTACGIKYEEGVGFVD

Protein Length: 104

Fln nts: ATGGGGTGGTCACTCGGCAAATACTCAATCTTCGTGCATAATAGTGTGCAGTAAAACAGGAACATGCTTTTGAAGGATATGAAATGATGAACTGAGATGGGCGAATGTTCACGGTGGAATGCCAAGTATCGAATTGAACGGCTAATCTGCACGACTTGAACACCATTGTATTGAAAAATTCACAAGGGGAAACAAA_-_ATGAGTGGAGATACTGAAAAAGAGTTATTGAAGGCCCAAATCAGGGAGATGAAGGATATGTGGCAGGTGGAATTGACCCATAGACAAGCTCGAGAGGACCTTCTAGAATCAGAACTGTTGGAGGTGAAAGAATGTCTTTTGAGTGCTGGGGAAAGAGAGAAAAATGAAGTGGATCATCTTCGTCGGCGTGTCAAGACTGCAAATAATTTGTTGTCATTTTTGAAGTCCAAAGCAAGAATTATGTCTATGCCAGGTTTTGCATATACTGCATGTGGTATCAAATATGAAGAAGGTGTAGGATTTGTTGAC

Fln Alignment:

sp_v1.1_unigene5302___DTEKELLKAQIREMKDMWQVELTHRQAREDLLESELLEVKECLLSAGEREKNEVDHLRRRVKTANNLLSFLKSKARIMSMPGFAYTACGIKYEEGVGFVD
B9SXM6______________DVDLSNLKSQLNDTHEIWKQEMERRQSQVDVLQAKLMEVKACIQGSEEDAKKELEVLWRRVKTTATLLTYLKSKARIMAVPDLAHTSCGIKQLEGVGLID

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
139	16		83		0.994512
160		80		20	0.995493
180	33		66		1.0
181	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain