SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5299

Length: 1539 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5299

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA topoisomerase II, putative n=1 Tax=Ricinus communis RepID=B9RVN3_RICCO	-	-	1.0e-10	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	unknown [Picea sitchensis]	-	-	0.0	89%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AE71

Fln msg: your sequence is shorter than subject: 362 - 435

Fln protein: RRDLGCHSKKTVTAEKTDSQSTNNNQASIASATTTNAQKEIAKPKRGGGKKGALKKQMEVESDEDDELDTSLQDRLASYNNGLSADQSVGEDQGSKQNSPTEDFKPKQKETTRRAKKAAPVYVDMSDEDDKMGTIPEEEENEEVGEKQPRRAGAKGKKAANGRTKKAATSASDSDSDFGIDEDDATDYEEAIPRKGSKKPAADKASKPSKTNLKKSNSTTTAPVPRKRGGPKKPTQGQKLIDEMLKPSSVEDADDSVQPSPYKKSPEKKVRKMRPSPFNKKSGSVMSKLTQESDTSPPSANGSAGSSSNTPEEVDEVPKPVGRSRPQRATRAPVQYVLSESSDEDEDEVEISDSDFVEDDD*

Protein Length: 363

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAAAAAACTGTAACTGCTGAAAAAACTGATTCTCAATCAACCAACAACAATCAGGCATCGATTGCCTCTGCTACTACAACTAATGCACAGAAGGAAATTGCAAAACCTAAGCGTGGAGGTGGCAAGAAAGGGGCTCTGAAAAAGCAAATGGAAGTGGAAAGCGACGAGGATGATGAATTAGATACCAGCCTGCAGGATCGGTTGGCTTCTTATAACAACGGCTTATCAGCAGATCAATCAGTTGGTGAGGATCAGGGAAGCAAACAAAATTCACCAACTGAAGATTTCAAACCAAAGCAGAAAGAGACCACTAGACGGGCAAAAAAGGCAGCCCCTGTATATGTTGATATGTCAGATGAGGATGATAAAATGGGAACCATTCCAGAAGAAGAAGAAAATGAAGAGGTGGGCGAGAAACAACCAAGGAGGGCGGGTGCAAAAGGGAAGAAGGCTGCCAATGGGAGAACAAAGAAGGCTGCCACTAGTGCCAGTGACAGTGATTCTGATTTTGGAATTGATGAAGATGACGCCACTGATTATGAGGAAGCCATCCCTAGGAAGGGTTCAAAGAAGCCTGCTGCTGATAAGGCCTCCAAGCCCTCGAAAACAAACCTTAAAAAGTCTAATTCTACAACTACTGCCCCTGTACCTAGAAAGAGAGGAGGACCCAAAAAGCCAACCCAAGGACAAAAGCTGATTGATGAAATGCTAAAGCCTAGTTCTGTTGAAGATGCTGATGATTCTGTACAGCCATCACCTTACAAAAAATCCCCGGAGAAAAAAGTGAGAAAAATGAGACCATCTCCTTTCAACAAGAAAAGTGGATCAGTGATGTCAAAACTGACGCAGGAGAGTGATACAAGCCCTCCTAGTGCAAATGGCTCTGCTGGATCTTCGTCCAACACTCCTGAAGAAGTTGATGAAGTTCCAAAGCCAGTTGGGCGAAGCAGGCCACAGAGAGCGACTCGAGCTCCTGTGCAGTATGTTTTGAGTGAGAGCAGCGATGAAGATGAAGATGAAGTTGAGATCAGTGATTCAGATTTTGTAGAAGATGATGATTAA___AGACAGCTTACTTTATTGATACAAATCCTTATAATATTGCATCTTGGGGTCAAAGTAACTATTGGGTGAAGTGTGACCATACAGCACAGGTATACAAGTGTCAGAGATGGAAGCTGACTGCAGATGAAGTGCGGTGGAGGTTTCTTAGACAAGTAGTTCACTTGAAATCAACTCTACTCATGCTCAAGTTTGGGACTGCTGAAATGGAAATACTATGCCTTTATTTTAGGAACTCGCTGAAGTTAGGCTAGTTCGAATCCTGTTTAGTATCTACTACTAAATCTCCCTATGATCAAGGGAATCATTTGGAGACTTTGAAGTTTGAAATGTACTCATGGAGTAAACTAGGAGATTAGACACTAGTTCATTTGTTAAAATTGCTGTTATTTTCAAAAATTCTGTTTTGAACTATTTCCCATAATTTGAATATAAGTTCCTGTTGGATTCCTGATT

Fln Alignment:

sp_v1.1_unigene5299___HSKKTVTAEKTDSQSTNNNQASIASATTTNAQKEIAXXXXXXXXXXXXXXQMXXXXXXXXXXXTSLQDRLASYNNGLSADQSVGEDQGSKQNSPTEDFKPKQKETTRRAKKAAPVYVDMSDEDDKMGTIPXXXXXXXXXXKQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATDYEEAIPRXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVXXXXXXXXXXTQGQKLIDEMLKPSSVEDADDSVQPSPYKKSPEKKVRKMRPSPFNKKSGSVMSKLTQESDXXXXXXXXXXXXXXXXPEEVDEVPKPVGRSRPQRATRAPVQYVL
D5AE71______________NTKKTVTAEKADSQSTTNNQASTASVTTTNAQKEIAKPKRGGGKKGAAKKKMEVESDEDDELDTSLQDRLAAYNHGLSADQSAVEDQGSKQNSPTEDFQPKQKETTKRAKKAAPVYVEMSDEDDTMGTIP-EEENEEEGEKQPRKAGAKGMKAADGRTKKATIVSDSDSDFGFEEDDD-TD-EEAIPRKGSKKPAADKPPKPSKTKPKKSNSTTTAPV-PRKRGPKRPTQGQKLIDEMLKPTSVDDAVDTVQPSPYKKSPEKKVRKMRPSPFNKKSGSVMSKLRQESDTSPPSANGSAGSSSNSPEEVNEVPKPAGRSRPQRATRAPVQYVL

SSRs (tot: 2)

Start position	End position	Sequence	Length
408	420	AGA AGA AGA AGA A	13
1027	1045	GATGAA GATGAA GATGAA G	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain