SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5292

Length: 905 nt

Origin of reads: Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5292

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	leucine-rich repeat transmembrane protein kinase, putative (EC:1.3.1.74)	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	leucine-rich repeat transmembrane protein	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	72%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	72%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	72%
Blast2go	Leucine-rich repeat	IPR001611	-	72%
Blast2go	Protein kinase-like domain	IPR011009	-	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRM4

Fln msg: Distance to subject end: 227 aas, your sequence is shorter than subject: 301 - 907

Fln protein: GTIPSEIGDIELLQILDLCDLHLTGAIPAVLSNCRFLLELDLSDNILDGIIPENIYNITYLRRLDLHGNRINGSIPLLLGNLNDMKYLDLSNNTLSGMIPSSLGNMTQLGFFNVSFNNLQGPIPNNSVMHKFGNQSFIGNKGLCGPPLDTPCTAPSPAPLIGPSGKTRVLTVSAIIAIVAAAIIAVGVCIITLMNVRALRRKKTELLVYESTPPSPDANLIVGKLVLFSKSLPSKYEDWEAGTKALLDKECFIGGGAIGTVYKATFEGGLSIAVKKLETLGRIKVQEEFEQEISRLGNLRH

Protein Length: 302

Fln nts: GGTACAATTCCTTCGGAGATTGGAGATATTGAGCTTCTTCAAATACTCGACTTGTGTGATCTGCATTTGACGGGTGCTATCCCTGCAGTGCTGTCTAATTGCAGATTTCTGTTAGAGCTTGATCTCTCAGACAACATTCTTGATGGCATTATCCCTGAGAATATTTATAATATCACATATCTGAGGAGGCTGGATCTGCATGGGAACAGAATCAATGGCAGCATTCCTTTATTGCTTGGTAACCTCAATGATATGAAATATCTGGATTTGTCGAATAATACACTATCTGGAATGATCCCTTCATCGCTGGGCAACATGACTCAACTGGGTTTTTTTAATGTTTCTTTCAACAACCTTCAGGGTCCTATACCGAATAATTCTGTAATGCATAAATTTGGCAATCAATCCTTTATTGGAAATAAAGGATTATGTGGACCTCCACTGGACACACCTTGCACAGCACCCTCGCCAGCTCCATTGATTGGACCAAGTGGAAAAACCAGGGTGTTAACTGTTTCTGCAATTATTGCCATAGTAGCTGCTGCAATAATAGCTGTAGGCGTGTGCATAATTACATTGATGAATGTGAGGGCCCTTAGGAGAAAAAAGACTGAATTGCTTGTCTATGAAAGCACACCTCCTTCTCCTGACGCTAATCTGATTGTAGGCAAACTTGTTCTCTTCAGCAAAAGCCTGCCATCAAAATATGAAGATTGGGAGGCAGGGACCAAAGCTTTACTTGACAAGGAATGTTTTATTGGAGGTGGTGCTATTGGAACCGTTTACAAAGCAACTTTTGAAGGAGGATTATCTATTGCAGTCAAGAAGCTGGAGACACTGGGGAGAATAAAAGTCCAAGAAGAATTTGAACAGGAAATCAGTCGTCTTGGTAACCTTCGACATCC

Fln Alignment:

sp_v1.1_unigene5292___GTIPSEIGXXXXXXXXXXXXXXXTGAIPAVLSNCRFLLELDLSDNILDGIIPENIYNITYLRRLDLHGNRINGSIPLLLGNLNDMKYLDLSNNTLSGMIPSSLGNMTQLGF-FNVSFNNLQGPIP---------------------------------------NN------SVMHKFGN---QSFIGNKGLCGPPLDTPCTAPSPAPLIGPSGKTRVLTVSXXXXXXXXXXXXXXXXXXTLMNVRALRRKKTELLVYESTPPSPDANLIVGKLVLFSKSLPSKYEDWEAGTKALLDKECFIGGGAIGTVYKATFEGGLSIAVKKLETLGRIKV--QEEFEQEISRLGNLRH
B8LRM4______________GSIPSELGSLPNLQELIVSGNSLSGDIPKALSKCKNLSKLDLSCNRFNGTIPEGLCNIPHLQYMLLNENSLRGEIPSDIGNCKRLLELQLGSNYLSGRIPGEIGGMSNLQIALNLSFNHLEGPIPTALGRLDKLVSLDVSDNKLSGAIPVNLKGMESLIDVNFSNNLFSGIVPTFRPFQNSPGSSFKGNRDLCGEPLNT-CGNIS---LTG--HQTRHKSSFGKVLGVVLGSGILVFLMVTIVVVLYVIKEKQQLAAAALDPP---PTIVTGN--VFVESLKQAI-NFESAVEATLKESNKLSSGTFSTIYKVIMPSGLVFAVRKLKSIDRTVSLHQNKMIRELEKLAKLSH

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
511	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain