SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5288

Length: 1372 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5288

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Prohibitin n=4 Tax=core eudicotyledons RepID=O04361_TOBAC	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	85%
Blast2go	prohibitin	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	cell growth	GO:0016049	Biological Process	92%
Blast2go	response to salt stress	GO:0009651	Biological Process	92%
Blast2go	cell division	GO:0051301	Biological Process	92%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	92%
Blast2go	mitochondrion organization	GO:0007005	Biological Process	92%
Blast2go	lateral root development	GO:0048527	Biological Process	92%
Blast2go	response to nitric oxide	GO:0071731	Biological Process	92%
Blast2go	mitochondrion	GO:0005739	Cellular Component	92%
Blast2go	nucleolus	GO:0005730	Cellular Component	92%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	92%
Blast2go	vacuole	GO:0005773	Cellular Component	92%
Blast2go	plasma membrane	GO:0005886	Cellular Component	92%
Blast2go	respiratory chain complex I	GO:0045271	Cellular Component	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Prohibitin	IPR000163	-	0.0	92%
Blast2go	Band 7 protein	IPR001107	-	0.0	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6I5L8

Fln msg:

Fln protein: MSNQSAVTFLSNIARVAFGLGLGGSLLGASLFTVDGGERAVLFDRFRGVLDETSGEGTHFIVPWLQKPYIFDVKTRPHTFSSVSGTKDLQMVNLTLRVLSRPQEDHLPRIFKTLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPRVSALVRDSLIRRAKDFDIILDDVAITHLSYGAEFSKAVEQKQVAQQEAERSKFVVAKAEQERRAAIIRAEGESDAAKLISDATAKAGMGLIELRRIEAAREIAATLSKSPNVVYLPGGNNMLLGLNPSFGSAR*

Protein Length: 284

Fln nts: ATGGGGATCGTTTGGCTCAATGTTTAGAAAAAGTAGGGTTTAAGGGCGGGGTTTATGAGTGGCAGCCCTTCTTCCGGAGAGCAGGAGCGGTAGAAGAACGGAGCAGAAGAGTGTTAAGTGGAAATTGCAATTGAAAA_-_ATGAGCAACCAGAGCGCGGTGACGTTTCTGTCGAATATAGCCCGGGTGGCGTTCGGGCTGGGGCTGGGGGGTTCTCTCCTCGGCGCTTCTCTGTTCACAGTGGATGGAGGGGAGCGGGCAGTTCTGTTTGACCGTTTCAGGGGAGTTTTGGACGAAACCTCCGGGGAGGGGACACATTTCATAGTGCCTTGGCTGCAGAAGCCCTACATATTCGACGTAAAAACCAGACCACACACGTTCTCCTCGGTTTCGGGCACGAAAGATCTACAGATGGTGAACCTGACCCTGCGGGTGCTGTCCCGGCCACAGGAGGATCACCTACCCCGGATCTTCAAGACCCTGGGACTGGAATACGATGAGAAGGTCTTGCCCTCTATCGGGAATGAGGTCCTCAAGGCGGTGGTGGCACAGTTTAATGCGGACCAGCTTCTGACGGAGCGGCCCCGCGTGTCAGCCCTGGTGAGAGACAGTCTCATTAGGAGGGCAAAGGATTTCGACATAATTCTCGACGACGTGGCCATTACGCACCTCTCCTATGGTGCTGAGTTTTCCAAGGCGGTCGAGCAGAAGCAGGTGGCGCAGCAGGAGGCGGAGAGATCTAAATTTGTTGTCGCAAAGGCGGAGCAGGAACGGAGGGCTGCCATCATTCGGGCAGAAGGAGAAAGTGACGCCGCCAAGCTCATCTCGGACGCCACTGCCAAAGCGGGCATGGGGTTGATAGAGCTGAGGCGCATTGAAGCCGCCAGAGAAATCGCTGCAACTCTCTCCAAGAGCCCCAATGTTGTCTATCTCCCAGGTGGAAATAATATGCTTCTCGGCCTCAACCCTTCTTTCGGCTCAGCTCGCTAA___TTTTCATTTTATTAAATATCTGGAACAATTTTTTTTGTTTATTTCGATACAAGTATAAGGGGATGTTTGGGCCCCTTTCTATATTTATCCAGAACCAAATAATTATTTTTAGGCTCTTTAAGCATTGCGACCATGGGCAAAATTTTTATGGGTATTTTCATTGTCTGCCTGGTTGGTTAAGAAAGATTTCATCTGCGTTTTTGTTTTTTTTATCCAATGATATATTTAACTTTAATTATCCATTTATTCAGTCTCAATGGTTGAGCAAATGTGGCATCTCTGTATTTTCGCATTTTTACAATGCTACCAGTATATCTCATAGCCTTTGACAATGCTATAATCTGCTGCTACTGAACATTGTGTGTTATATATAAAACAAAATTTAG

Fln Alignment:

sp_v1.1_unigene5288___SNQSAVTFLSNIARVXXXXXXXXXXXXXXXXTVDGGERAVLFDRFRGVLDETSGEGTHFIVPWLQKPYIFDVKTRPHTFSSVSGTKDLQMVNLTLRVLSRPQEDHLPRIFKTLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPRVSALVRDSLIRRAKDFDIILDDVAITHLSYGAEFSXXXXXXXXXXXXXXRSKFVVXXXXXXXXXXXXXXXGESDAAKLISDATAKAGMGXXXXXXXXXXXXXXXXXSKSPNVVYLPXXXXXXXXXXPSFGSAR
F6I5L8______________SSQAAVSFLTNLARAAFGLGAAASVLNASLYTVDGGQRAVLFDRFRGVIDDTIGEGTHFLVPWLQKPYIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFKTLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTDRPHVSALVRDSLIRRAKDFNIVLDDVAITHLSYGAEFSKAVEQKQVAQQEAERSKFVVAKAEQERRAAIIRAEGESESAKLISDATAAAGMGLIELRRIEASREIAATLAKTPNVAYLPGGNNMLLGLNPTIAGGR

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
72	14		14	71	0.984337
73			14	85	0.993533
74		85	14		0.993533
75		85	14		0.993533
597	78		21		1.0
691	91		8		0.999766
741	95	4			0.997494
744	2	2		90	0.9465
810		93	2	4	0.98137
1016	90			10	0.90298
1037	88		11		0.923564
1038		88	11		0.923564
1039	88		11		0.923564
1052		22		77	0.999999
1157		80		20	0.995493
1210			33	66	1.0
1254	33		66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain