SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5287

Length: 1592 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5287

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Abietadienol/abietadienal oxidase n=1 Tax=Pinus taeda RepID=C72B1_PINTA	-	-	93%
FL-Next	sp=Abietadienol/abietadienal oxidase; Pinus taeda (Loblolly pine).	-	-	96%
Blast2go	cytochrome p450 family protein	-	-	84%

Source	InterPros	Term	Type	Identity
Blast2go	Cytochrome P450	IPR001128	-	84%
Blast2go	Cytochrome P450, E-class, group I	IPR002401	-	84%
Blast2go	Cytochrome P450, conserved site	IPR017972	-	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q50EK6

Fln msg:

Fln protein: MADQISLLLVVFTAAVALLHLIYRWWNAQRGQRKTNNEKNQEVHLPPGSTGWPLIGETYSYYRSMTSNRPRQFIDDREKRYDSDIFVSHLFGSQAVISSDPQFNKYVLQNEGRFFQAHYPKALKALIGDYGLLSVHGDLQRKLHGIAVNLLRFERLKFDFMEEIQNLVHSTLDRWVDKKEITLQHECHQMVLNLMAKQLLDLSPSKETNEICELFVDYTNAVIAIPIKIPGSTYAKGLKARKVLVTKISNIIKERRNNPHVVHKDLLTKLLEEDSISDEIICDFILFLLFAGHETSSRAMTFAIKFLTTCPKALTQMKEEHDAILKAKGGHKKLEWDDYKSMKFTQCVINETLRLGNFGPGVFRETKEDTKVKDCLIPKGWVVFAFLTATHLDEKFHNEALTFNPWRWELDQDVSNNHLFSPFGGGARLCPGSHLARLELALFLHIFITRFRWEALADQHPSYFPLPYFAKGFPVRLYNRE*

Protein Length: 483

Fln nts: ATGGGGAGGGGTATACATGGGGAGCATCAGAACCAATATCCACTGATAGGATTAACGAGGCGACA_-_ATGGCAGACCAAATATCATTACTGTTGGTGGTGTTCACCGCAGCGGTGGCGCTCCTCCACCTTATTTACAGGTGGTGGAATGCCCAGAGAGGCCAGAGAAAGACTAATAATGAGAAGAATCAGGAGGTCCATCTGCCTCCTGGTTCGACTGGATGGCCGCTGATTGGCGAAACCTACAGTTATTATCGCTCCATGACCAGCAATCGTCCCAGACAATTCATCGACGACAGAGAGAAAAGATACGATTCGGACATTTTCGTATCTCATTTATTTGGAAGCCAAGCAGTTATATCATCGGATCCCCAGTTCAACAAGTATGTTCTGCAAAACGAGGGGAGGTTTTTTCAAGCTCATTACCCAAAGGCACTGAAAGCTTTGATAGGCGATTACGGGCTGCTCTCGGTGCATGGCGATCTGCAGAGGAAGCTCCATGGAATAGCGGTGAATTTGCTGAGGTTTGAGAGGCTGAAATTCGATTTCATGGAGGAAATCCAGAATCTAGTTCACTCCACGCTGGATAGATGGGTAGACAAGAAGGAAATTACTTTGCAGCATGAATGTCACCAGATGGTTCTCAACTTGATGGCCAAACAACTGCTCGATTTATCTCCTTCCAAAGAAACAAATGAGATTTGCGAGCTATTCGTGGACTATACCAATGCAGTGATCGCCATTCCCATCAAAATTCCTGGTTCTACTTATGCAAAGGGACTCAAGGCCAGGAAGGTCCTAGTAACAAAGATTTCCAACATAATAAAAGAGAGAAGGAATAATCCTCATGTTGTTCACAAAGATCTGTTAACTAAACTTTTGGAAGAAGACTCTATTTCTGATGAAATTATTTGTGATTTTATATTATTCTTGCTCTTTGCTGGACATGAGACTTCTTCTAGAGCCATGACATTTGCTATCAAGTTTCTCACAACTTGTCCCAAAGCATTGACTCAAATGAAAGAAGAACATGATGCTATATTAAAAGCCAAAGGCGGTCATAAGAAATTGGAGTGGGATGATTATAAATCAATGAAATTCACTCAATGTGTTATAAATGAAACACTTCGACTAGGTAACTTTGGCCCTGGGGTGTTTAGAGAAACTAAAGAAGACACTAAAGTGAAAGATTGTCTCATTCCAAAAGGATGGGTGGTCTTTGCTTTTTTGACTGCAACCCATCTAGATGAAAAGTTCCACAATGAAGCTCTTACATTTAACCCATGGAGATGGGAATTGGATCAAGATGTATCGAATAATCACTTATTTTCACCTTTTGGAGGGGGAGCTAGGCTTTGTCCAGGGTCCCATCTTGCTAGGCTTGAATTGGCACTTTTCCTTCACATATTTATCACAAGATTCAGATGGGAGGCACTTGCTGATCAACATCCCTCATATTTTCCATTACCTTATTTTGCTAAAGGCTTTCCTGTGCGCCTTTATAACAGAGAATGA___AGAAATAATTTGTTTATTTTGATGTAATACTTATAAATAAACATAACTTTAAATTAGCGAATATACTAATTATAAAAAAAC

Fln Alignment:

sp_v1.1_unigene5287___MADQISXXXXXXXXXXXXXXXIYRWWNAQRGQRKTNNEKNQEVHLPPGSTGWPLIGETYSYYRSMTSNRPRQFIDDREKRYDSDIFVSHLFGSQAVISSDPQFNKYVLQNEGRFFQAHYPKALKALIGDYGLLSVHGDLQRKLHGIAVNLLRFERLKFDFMEEIQNLVHSTLDRWVDKKEITLQHECHQMVLNLMAKQLLDLSPSKETNEICELFVDYTNAVIAIPIKIPGSTYAKGLKARKVLVTKISNIIKERRNNPHVVHKDLLTKLLEEDSISDEIICDFILFLLFAGHETSSRAMTFAIKFLTTCPKALTQMKEEHDAILKAKGGHKKLEWDDYKSMKFTQCVINETLRLGNFGPGVFRETKEDTKVKDCLIPKGWVVFAFLTATHLDEKFHNEALTFNPWRWELDQDVSNNHLFSPFGGGARLCPGSHLARLELALFLHIFITRFRWEALADQHPSYFPLPYFAKGFPVRLYNRE
Q50EK6______________MADQISLLLVVFTAAVALLHLIYRWWNAQRGQKRTSNEKNQELHLPPGSTGWPLIGETYSYYRSMTSNRPRQFIDDREKRYDSDVFVSHLFGSQAVISSDPQFNKYVLQNEGRFFQAHYPKALKALIGDYGLLSVHGDLQRKLHGIAVNLLRFERLKFDFMEEIQNLVHSTLDRWVDKKEIALQNECHQMVLNLMAKQLLDLSPSKETNEICELFVDYTNAVIAIPIKIPGSTYAKGLKARELLIRKISNMIKERRDHPHIVHKDLLTKLLEEDSISDEIICDFILFLLFAGHETSSRAMTFAIKFLTTCPKALTQMKEEHDAILKAKGGHKKLEWDDYKSMKFTQCVINETLRLGNFGPGVFRETKEDTKVKDCLIPKGWVVFAFLTATHLDEKFHNEALTFNPWRWELDQDVSNNHLFSPFGGGARLCPGSHLARLELALFLHIFITRFRWEALADEHPSYFPLPYLAKGFPMRLYNRE

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1428	18		81		0.999994
1441		81	18		0.999994
1473	12			87	0.992554
1489	10		90		0.90298
1585		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain