SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5273

Length: 665 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5273

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain	-	-	5.0e-05	25%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	unknown [Picea sitchensis]	-	-	4.61874e-16	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	C2 calcium-dependent membrane targeting	IPR000008	-	4.61874e-16	61%
Blast2go	C2 calcium/lipid-binding domain, CaLB	IPR008973	-	4.61874e-16	61%
Blast2go	C2 membrane targeting protein	IPR018029	-	4.61874e-16	61%

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
203		28	57	14	1.0
205		71		28	1.0
210	28		71		1.0
213	28		71		1.0
217	28	71			1.0
220		71	28		1.0
245		85		14	0.993533
404		71		28	1.0
419	88	11			0.999952
421	88			11	0.999952
422		11		88	0.999952
423			11	88	0.999952
424	88			11	0.999952
425		88	11		0.999952
434		11	88		0.999952
436	88			11	0.999952
440	88			11	0.999952
441		11	88		0.999937
442	11	88			0.999937
458	72		27		1.0
655	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain