SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5264

Length: 1631 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5264

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_11.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7T9P1_VITVI	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	cholinephosphate cytidylyltransferase	-	-	86%

Source	InterPros	Term	Type	Identity
Blast2go	Cytidylyltransferase	IPR004820	-	86%
Blast2go	Cytidyltransferase-related	IPR004821	-	86%
Blast2go	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUF9

Fln msg:

Fln protein: MVRKNRKRPANQRNDSSQVDQEPRQQSCAEIVYEPPVRFEPHPSPDPVKGERTEKPVRVYADGIYDLFHFGHARSLEQAKKVFPNTYLLVGCCNDEVTRRYKGKTVMTEAERYESLRHCRWVDEVIPDAPWVINQEFLDKHKIDYVAHDALPYADTSGTGKDVYEFVKSAGKFKETKRTDGISTSDVIMRILKGYNDYVMRNLDRGYTRKDLGVSYVKEKQLRVNMGITKLRQKVKEQQGQMGKKLHTVAKTAGMHHSEWVENADRWVAGFLEKFEEGCHMMETAIKDKIQESLKRQNSRSPSPSKMLENAVQ*

Protein Length: 315

Fln nts: CGTCGTGACCATGGGGGTTCACACAATCGTAGCCAGGGGTTCACTCTCCACTCGCTCCAAGTGTACTCCCCAATATATGCTTACTCGCCCATAATCTTGTCAGATCATCCCATCCTGAATTTAGAAGAGTTGATCTTTTTAAGCTAATCGTTTCCTGTGCTTAGGGATTTTTTTGCTTCCATTTCGTTTGCGATCGCAGTGCCATTTTACACAATCGAGAAGGATAAAACG_-_ATGGTTCGCAAGAATCGAAAGAGACCCGCCAACCAGAGAAATGATTCATCACAGGTGGATCAAGAACCCCGGCAGCAGAGCTGTGCAGAGATTGTCTACGAGCCGCCAGTGAGATTCGAACCGCACCCATCTCCAGATCCCGTGAAGGGCGAGAGGACTGAGAAGCCCGTCAGGGTCTATGCGGATGGAATTTATGATTTGTTTCACTTTGGGCATGCGCGATCACTGGAACAGGCCAAGAAAGTGTTTCCAAACACATACCTCCTTGTGGGTTGCTGCAATGATGAAGTCACTCGCAGGTATAAGGGAAAAACTGTAATGACTGAAGCTGAGCGCTATGAATCCCTTCGCCATTGCAGGTGGGTTGACGAAGTTATCCCAGATGCTCCATGGGTGATCAATCAAGAATTCTTAGACAAGCATAAGATTGACTATGTAGCCCATGATGCCCTTCCGTATGCCGATACCAGTGGAACTGGCAAAGATGTCTATGAATTTGTCAAGTCAGCTGGAAAATTTAAGGAAACAAAGCGGACCGATGGCATCTCAACATCGGATGTCATAATGAGGATACTTAAAGGCTACAATGACTATGTTATGCGCAACCTTGATCGTGGATACACAAGGAAAGACCTTGGAGTTAGCTATGTGAAGGAAAAGCAATTGAGGGTCAACATGGGAATAACAAAACTACGTCAAAAAGTGAAGGAACAACAAGGGCAAATGGGGAAAAAGTTACATACGGTTGCCAAGACAGCTGGCATGCATCACAGTGAATGGGTTGAGAATGCTGATCGTTGGGTGGCTGGCTTTTTAGAAAAGTTTGAAGAGGGGTGTCATATGATGGAAACAGCAATTAAAGACAAAATACAAGAGAGCCTGAAGAGGCAGAACTCAAGAAGCCCATCACCTTCAAAAATGCTGGAGAACGCAGTGCAGTAG___CATAAGCTTGTGCTATCTGCCAAGTCATTCATTGATTCTTAATAGAAAATTTTTGTATGTCTCCTACATTTTGCTCAGGAAACTGAAGTAATTTTGCTTAGAGTTCATTGCTCAGGAAACTGATGTAATTTTTGTATGTCTCCTACATTTTGACATTTTGTTCAATCGCTGGTTGATTATACCGTTTCTCTTTCATCATATGTTAACCGTTTCAAGTCCTATGGTGTTTACGGTCAAGCACCGTGATGCTCATTAGCTATGTAATAAATCAAATTATTTTTGAGTTTTGACTCAATGTCTCTTTGCTGTTAAGTATTCCTGATTCTGGAATTCTGGATTCTAAGACCATTACCATGATAATGGATTTGTTATCGTATCCCAGGATTTGGTTCCGTAAGTTCTATGGAAATGTTAATGCACTGTATCCCTTAAATTTATTACGGCATAATGATGTAGCT

Fln Alignment:

sp_v1.1_unigene5264___MVRKNRKRPANQRNDSSQVDQEPRQQSCAEIVYEPPVRFEPHPSPDPVKGERTEKPVRVYADGIYDLFHFGHARSLEQAKKVFPNTYLLVGCCNDEVTRRYKGKTVMTEAERYESLRHCRWVDEVIPDAPWVINQEFLDKHKIDYVAHDALPYADTSGTGKDVYEFVKSAGKFKETKRTDGISTSDVIMRILKGYNDYVMRNLDRGYTRKDLGVSYVKEKQLRVNMGITKLRQKVKEQQGQMGKKLHTVAKTAGMHHSEWVENADRWVAGFLEKFEEGCHMMETAIKDKIQESLKRQNSRSPSPSKML
A9NUF9______________MVRRDRKKPTIKRNDSSQVDQEPRQQSCAETVYEPPVRFEPHPSPDPVKSEWTEKPIRVYADGIYDLFHFGHARSLEQAKKLFPNTFLLVGCCNDEVTRRYKGKTVMTEAERYESLRHCRWVDEVIPDAPWVINREFIDKHQIDYVAHDALPYADTSGAGKDVYQFVKSVGKFKETRRTNGISTSDVIMRMLKGYNEYVMRNLDRGYTRKDLGVSYVKEKQFRVNMGITKLRQRVREQQEQMGKKLHTVAKTAGMHHSEWVENADRLVAGFLEKFEEGCHMMETAIKEKIQESLKRQNSRSPSPSKMV

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
252	80			20	0.995493
254	80		20		0.995493
256	80		20		0.995493
266	80	20			0.995493
283	20		80		0.995493
294	20	80			0.995493
358		66		33	0.997452
382	66	33			0.997452
476		66	33		0.997452
558	80	20			0.995493
559	80		20		0.995493
583		16		83	0.994512
696	88			11	0.923564
707	11		88		0.923564
712		11	88		0.923564
715	88	11			0.923564
726	88	11			0.923564
736	12		87		0.992554
747	12		87		0.992554
775		12		87	0.992554
778		12		87	0.992554
781	12		87		0.992554
822	90		10		0.90298
823		90	10		0.90298
884	87		12		0.992554
923	16	83			0.994512
951	75		25		0.996473
998		80		20	0.995493
1074	83			16	0.994512
1098	83		16		0.994512
1126		14		85	0.993533
1130	14		85		0.993533
1135		14		85	0.993533
1137		14		85	0.993533
1148	12		87		0.992554
1163	87		12		0.992554
1221	10	90			0.90298
1261	14			85	0.993533
1272	33		66		1.0
1298	18	81			0.999994
1314	11			88	0.923564
1343		12		87	0.992554
1350		12		87	0.992554
1360	30			70	1.0
1366		30		70	1.0
1374		50		50	1.0
1382	80	20			0.999996
1384	80			20	0.999996
1438	70			30	1.0
1440			90	10	0.90298
1455	50		50		1.0
1460	12		87		0.992554
1472		10		90	0.90298
1526	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain