SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5219

Length: 577 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene5219
TCTTGTATTTTCAAACGTACTGGGCCCGGTGGAAGCAGTTCACGTCGTGACCTTGGCTGTCACTCATATCGTTACAACCGTCTCCGGAATGCCTCAGGGACTGATCGTGCATTTTCAGAGCTATGCCGGGAAAGCAAAGCTTATAGCAATGGCTGCAGAGGATATGTTTCCCAATCCTCACCAACTCTGTATGGACTGTGCTCACGCCCTCACTCGAATGAAGGAAGAGGCTCTGTCTCTTTCTGCAAATAAGTTATCTAACCAGTATAGGTTCCGCCCAAGCTCTAATGTATTGGGTGTCTATAAGGATAAAAAAAGATGAGGTGCAGATCTCATTTGTTCAGATGATCTACACAGATAAAAAATTAAATTGAGGTTTGAAATTGGGATACAAACCCCAATTGTTGTATAATTAGCACAAATTCATTATTGTCTGATTAGCATAGCTTCAGGTAAGTTGACGATTTGAGCATCAAGGAGGATTCAATATCAAAAACAGATACAATTTTTTTTGGTGCTTCAAAGATCATAAGATCCATCGTTAAAATGAGTTTATTCTAATTTTAGTTTTTAAAAC

Ace file of the UniGene sp_v1.1_unigene5219 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1298 domain containing protein	-	-	1.0e-15	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Blast2go	hypothetical protein SELMODRAFT_269987 [Selaginella moellendorffii]	-	-	6.86148e-14	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	O-acyltransferase, WSD1, C-terminal	IPR009721	-	6.86148e-14	66%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC33

Fln msg: your sequence is shorter than subject: 107 - 162

Fln protein: LVFSNVLGPVEAVHVVTLAVTHIVTTVSGMPQGLIVHFQSYAGKAKLIAMAAEDMFPNPHQLCMDCAHALTRMKEEALSLSANKLSNQYRFRPSSNVLGVYKDKKR*

Protein Length: 108

Fln nts: TCTTGTATTTTCAAACGTACTGGGCCCGGTGGAAGCAGTTCACGTCGTGACCTTGGCTGTCACTCATATCGTTACAACCGTCTCCGGAATGCCTCAGGGACTGATCGTGCATTTTCAGAGCTATGCCGGGAAAGCAAAGCTTATAGCAATGGCTGCAGAGGATATGTTTCCCAATCCTCACCAACTCTGTATGGACTGTGCTCACGCCCTCACTCGAATGAAGGAAGAGGCTCTGTCTCTTTCTGCAAATAAGTTATCTAACCAGTATAGGTTCCGCCCAAGCTCTAATGTATTGGGTGTCTATAAGGATAAAAAAAGATGA___GGTGCAGATCTCATTTGTTCAGATGATCTACACAGATAAAAAATTAAATTGAGGTTTGAAATTGGGATACAAACCCCAATTGTTGTATAATTAGCACAAATTCATTATTGTCTGATTAGCATAGCTTCAGGTAAGTTGACGATTTGAGCATCAAGGAGGATTCAATATCAAAAACAGATACAATTTTTTTTGGTGCTTCAAAGATCATAAGATCCATCGTTAAAATGAGTTTATTCTAATTTTAGTTTTTAAAAC

Fln Alignment:

sp_v1.1_unigene5219___LVFSNVLGPVEAVHVVTLAVTHIVTTVSGMPQGLIVHFQSYAGKAKLIAMAAEDMFPNPHQLCMDCAHALTRMKEEA
D5AC33______________LGFSNLIGPADEIEFCDNHVTHIIPTAYVNHTSIVMHFISYSGKGKLVALVSDHVVPDPQQLCSDCTDALHRMKEAA

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
492			10	90	0.999898
493	10	90			0.999898
498		10	90		0.999898
507	35	5	60		1.0
512		10		89	0.999919
522	83	11			0.999887
524	5	83	11		0.999887
525		88	11		0.999937
526	83		5	11	0.999887
527	88			11	0.999952
529		11	88		0.999952
530		11		88	0.999952
531	11	88			0.999952
533		88	11		0.999952
536	12	87			0.999964
537			87	12	0.999964

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain