SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5191

Length: 1243 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene5191 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Primary amine oxidase (Fragment) n=1 Tax=Vitis vinifera RepID=D7T6W4_VITVI	-	-	60%
FL-Next	sp=Amine oxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	protein	-	-	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Copper amine oxidase	IPR000269	-	0.0	73%
Blast2go	Copper amine oxidase, C-terminal	IPR015798	-	0.0	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKL1

Fln msg: your sequence is shorter than subject: 351 - 730

Fln protein: AGEDGVGLSASPLDPLNDCPRNAYYMDAFYAGADGKPVKISDAFCVFERYAGDVSWRHTGGNANSVITEVRPEVTLVVRMVSTVGNYDYIFDWEFKTNGAIRVQVGLSGILEMKASIYKNLEEVENAEIYGTLLAENTIGVFHDHFLTFHLDMDVDGVQNSFVKVMMKRVDVPHEESPRKSYWTIDRKVAQREEDAQILFDIKKPTDLLVVNPYHKTKMGQDVGYKLLPNSIIASLLSLDDYPQIRAAFTNNNVWVTPYNHTEQWVGGMYMEQSQGDDTLATWTKRNQNIEKEDIVLWYTMGIHHIPYQEDFPVMPTTSTSFELRPANFFERNPILKLWPMSPSTLPTCT*

Protein Length: 352

Fln nts: ATGCAGGGGAGGATGGTGTGGGCTTAAGCGCCTCCCCGCTTGACCCACTCAATGATTGTCCTCGAAATGCTTATTATATGGATGCATTCTACGCAGGAGCCGATGGAAAACCAGTAAAAATATCGGATGCATTCTGCGTTTTTGAAAGGTATGCCGGAGATGTTTCATGGCGTCATACAGGAGGGAACGCAAACTCGGTGATCACAGAAGTAAGACCAGAGGTAACATTGGTGGTGAGAATGGTTTCCACTGTGGGCAACTATGACTACATCTTTGATTGGGAATTCAAAACAAACGGAGCCATCCGTGTTCAAGTTGGTTTGTCTGGCATTCTGGAAATGAAGGCTTCAATTTACAAGAATTTGGAGGAAGTAGAAAATGCAGAGATATATGGGACCTTGTTAGCTGAAAACACCATTGGGGTTTTCCATGACCATTTTCTTACATTCCACCTTGACATGGATGTGGATGGTGTCCAAAACTCATTTGTAAAGGTAATGATGAAGAGAGTGGACGTTCCTCATGAGGAGTCTCCTAGGAAAAGCTATTGGACAATAGACAGAAAGGTTGCCCAGAGAGAAGAAGATGCCCAAATTCTGTTTGATATCAAGAAACCTACAGACCTCTTAGTGGTGAATCCATACCACAAGACTAAAATGGGGCAAGATGTTGGATACAAACTATTGCCTAATTCAATTATTGCCAGTCTTCTCTCTTTGGATGATTATCCACAAATCCGGGCAGCATTTACTAACAATAATGTTTGGGTTACTCCATATAATCATACTGAGCAATGGGTTGGTGGAATGTATATGGAGCAAAGCCAAGGTGATGATACATTGGCCACATGGACTAAAAGGAATCAAAATATTGAAAAAGAAGATATAGTGCTTTGGTACACTATGGGAATCCATCATATTCCTTATCAAGAAGATTTTCCAGTGATGCCAACTACATCTACATCATTTGAGTTGAGACCAGCTAACTTTTTTGAAAGGAATCCTATCCTCAAGTTGTGGCCTATGTCTCCATCTACTTTGCCCACTTGCACATAG___ATGGATTAAATGGTCTGTCAAGACAACTTCATATTAAGTCAATAGTTTCAAAGATAAGTTTATTGTTTCAAATATCTTTGAAATTAGATTGAAATAAAGTTATAGTTAGTACAAATTATTTGAATAATTAAATCTTGTAAGTTATTTTGATTTTAATAAAGAGTGAGTAGAGAATTGTTTTGATCAAT

Fln Alignment:

sp_v1.1_unigene5191___AGEDGVGLSASPLDPLNDCPRNAYYMDAFYAGADGKPVKISDAFCVFERYAGDVSWRHTGGNANSV-ITEVRPEVTLVVRMVSTVGNYDYIFDWEFKTNGAIRVQVGLSGILEMKASIYKNLEEVENA-EIYGTLLAENTIGVFHDHFLTFHLDMDVDGVQNSFVKVMMKRVDVPHEESPRKSYWTIDRKVAQREEDAQILFDIKKPTDLLVVNPYHKTKMGQDVGYKLLPNSIIASLLSLDDYPQIRAAFTNNNVWVTPYNHTEQWVGGMYMEQSQGDDTLATWTKRNQNIEKEDIVLWYTMGIHHIPYQEDFPVMPTTSTSFELRPANFFERNPILKLWPMSPSTLPTC
B8LKL1______________AGEYGIGLTAMSLDPLNDCPRNAYYMDGLFATADGTPYVRSNMVCIFERYAGEIAWRHTECPITDMQIREVRPKVTLVVRMAASVGNYDYIVDWEFQTDGLIRAKVGLSGILMIKGTKYENVDQISSTDELHGTLLAENIIGVSHDHYITFYLDMDIDGKDNSFVQVEMAKKTVKNGPTPRKSFWKAEKHIAQTEKDAQIKLSLYQPAEFHVINPSRKTNIGNPVGYKLVPGATAASLLDHDDPPQLRAAFTNNQIWVTPYNRSEEWAGGQYVYQSKGDDTLAVWSDRDRPIENKDIVIWYTLGFHHLPCQEDYPIMPTVSSSFDLKPTNFFDRNPIMRTTPCYEKDLPTC

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
219	85		14		0.993533
234		50		50	1.0
343		75		25	0.996473
383		33		66	1.0
413	20		80		0.995493
424		20	80		0.995493
425		16	83		0.994512
427	16			83	0.994512
623	50		50		1.0
625	25		75		0.996473
626	50		50		1.0
631		60		40	1.0
635	60			40	1.0
855		83		16	0.994512
884		16		83	0.994512
886	16	83			0.994512
896	83		16		0.994512
897	83		16		0.994512
929	16			83	0.994512
932	16	83			0.994512
935		16		83	0.994512
939	83			16	0.994512
940		83		16	0.994512
941	83			16	0.994512
942	16	83			0.994512
943	16		83		0.994512
945	83			16	0.994512
1023		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain