SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5182

Length: 2908 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

>sp_v1.1_unigene5182
ATGGGGTCAGAGAAGTCCCTGAACATCATGGCGCCAGGGATAATTATCACCTACAGCCTCTAATTATTTATTCAGTGTTTACAAGCCTTCCTCGTAAGTTTAGTAAATCTATAAATTTATGAATGGTGGCTACCGCCATCAACATTCTCAAAGAATCGCGGGTTTCTTCTGAGTCTGAGAGTTTGAAAGACTCTCAGATATTATTTCATGGGGCCTAGTGCAGTTCCAATTGCAGGTCTGATATTGTGGATATTGGTTTTTCGCTGTGGGATTCATGGGGAGCTCATGTTTGCTTGTGACAGTAGGATTCCCAATGCTGCCAATTACCCGTTCTGTAGCACGGCCCTGCCTATCAAAGACAGAGTTAATGATCTCATTGGGCGTCTTACATTAGAGGAGAAGATTCAACAGTTGGTGAGCAAGGCAGCTGGAGTTCCCAGGCTGGGAATTCCAGGCTATGAATGGTGGTCAGAAGCCTTGCACGGGGTTTCAAATGTTGGCCCTGGAACTCAGTTTGCAGCTGGGTCTATTCCTGCTGCTACAAGTTTTCCCCAAGTCATTCTTACTGCAGCTTCATTCAATATATCCCTCTGGGACGCCATAGGACAGGCGGTATCAACAGAGGCTCGTGCAATGTATAATACAGGATTGGCAGGATTGACATATTGGAGCCCTAATGTGAATATATTTCGTGATCCTAGATGGGGACGAGGTCAAGAGACTCCAGGAGAGGATCCTTTACTTGTTAGTGAATATGCCGCCAACTATGTGAGGGGATTACAATTAACAGATAGTCTGGATACTAACAGATTAAAGGTTGCTGCCTGCTGCAAACATTACACTGCCTATGATTTGGATAACTGGAATGGTGCTGATCGCTTTCATTTTGATGCCCAGGTTACACAACAGGACCTGGAGGACACTTACAATCCACCGTTTAAGAACTGCGTGATTGATGGCCAGGCTGCAAGTGTTATGTGTTCTTACAATAAAGTTAATGGAGTTCCAACCTGTGCAGACCCAAAGCTTCTCAATGGAGTTATTAGAGGAGAATGGGGATTGAATGGATACATAGTATCAGACTGTGATTCAGCAGAAGTTATGTACAACACCCAGCACTGGACTTCGACTCCTGAGAGAGCAGCGGCAGATATCATGGAGTCTGGATTGGATGTCAACTGTGGAAATTTCCTAGCGGATCATGGGGAAGCAGCAGTGAAGGTTGGGAAGCTGAAGGAAACCTTTATAGACACAGCTCTATTCAACTCTTTCACTGTTCAGATGCGCCTGGGATTATTTGATGGCAATCCAGCATTGCAGCCCTACGGTAATCTTGGACCTGGGGATGTTTGTAGTGAACAACATCAGCAGCTGGCCTTAGAGGCTGCAAGGCAGGGAATAGTTCTGTTAAAAAACAATAATGGAGCATTGCCATTATCCCCAACCCAAATCAGATCATTGGCTGTCGTTGGACCTAATGCAGATGTCACCAATGTCATGATTGGCAACTATGCAGGTATACCATGCAGATACACAACACCTCTACAAGGTTTAGGTAAATACACAGAAACTATACATAAGCTTGGCTGTGAAAATGTAGCCTGCCAAAGCAATTCTATACTATTAAGTGAAGCTTCCGAGGCAGCTACTCAAGCAGATGCCACAGTGATAATCGTAGGAGCAGACCAAACAGTAGAAGCAGAGGGGCTTGACAGAGTGAGCCTGTTATTGCCCGGACAACAAGAACAACTGGTATTAGACACAGCAGATGCAGCAAGAGGAACAGTGATATTAGTAGTAATGTCAGGGGGGCCAATGGACATTTCATTTGCCAGAGATAATCCGAAGATATGCGGCATTCTGTGGGTGGGATATCCGGGCCAAGCTGGAGGAGATGCATTGGCTGACATACTTTTTGGCCAGCACAATCCAGGTGGGAGATTGCCTGTAACATGGTATCCGGAAGAATTTGCAATAAAAGTACCCATGACAAACATGAACATGCGTCCTGATCCTGCAACTGGTTATCCCGGCCGAACATACAGATTTTACACAGGGAATTCAGTGTACCCATTTGGCTATGGACTGAGTTACACAACATTCTCTCATTCTTTGGTCCGCGCACCAAAGTTGGTTTCATTGTCCCTTCATGAAGGCCTACTTAAGTCATGCCGTGGAATGAACACTTCCTGCGCTTCGGTCGAAGTGGAGAACACCAAGTGCCAGGGATTACTCTTTGATCTTCATGCGGACGTGCATAACACAGGTAGCAGAGATGGAGATCATGTTCTGCTCCTGTTTGCCAGTCCTCCTGCTATTCAGGGAATTCCGCAGAAGCGTCTTATGGGCTTCAGAAAAGTCCATGTTGGTGCAGGAGGCACAGAAAGAGTGCATTTCAGCATTGATGTGTGCAAAGATCTGAGTGTTGTGGATGGGAGAGGTGTGAAGCAATTGCTTTTGGGTTCTCACCTTCTTCATGTTGGTGATACCAAGCATACCCTTCGTGTTGAAATTGAATGAATATGCCTCGAAAAGAGTAAGATCCCGAGTGGATTGTCCGACATCAGAGATCAGAGTGAAATTATTGAGCAACGACTCCTAAAAATTGGGTGTGGTTGCTGTGGTGTAGTGTAATAATTTGGAAGCTTGTGCAGGGTTAGGCTAGTGGAAGTTGGTAGAGCTTCATTGTTGCCTCTGCTGGGAAGTCTGCAAAGAGTTCTGACACCACTCTAATTGGAAAAAATTAAGCAGTGTTGGCTCTAAGTGGAAACATGCAGGAGTTTTAGTTCCCCTCTAATTGAAAAAACCAAACCATTGGGTGGTTCTTTTAAACAAAACTATTGGTTTCTGTTTATTATTGAAAAACCAATGTTCCTGATATTTATGATAGTAATGCATTTTCATGAAG

Ace file of the UniGene sp_v1.1_unigene5182

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	XYL4; XYL4; hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	beta-xylosidase 4	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xylan 1,4-beta-xylosidase.	EC:3.2.1.37	-	0.0	75%

Source	KEGGs	Term	Identity
Blast2go	Starch and sucrose metabolism	00500	75%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	75%
Blast2go	Metabolic pathways	01100	75%

Source	GOs	Term	Type	Identity
Blast2go	xylan catabolic process	GO:0045493	Biological Process	75%
Blast2go	xylan 1,4-beta-xylosidase activity	GO:0009044	Molecular Function	75%
Blast2go	apoplast	GO:0048046	Cellular Component	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABI5

Fln msg: your sequence is longer than subject: 771 - 304

Fln protein: MGPSAVPIAGLILWILVFRCGIHGELMFACDSRIPNAANYPFCSTALPIKDRVNDLIGRLTLEEKIQQLVSKAAGVPRLGIPGYEWWSEALHGVSNVGPGTQFAAGSIPAATSFPQVILTAASFNISLWDAIGQAVSTEARAMYNTGLAGLTYWSPNVNIFRDPRWGRGQETPGEDPLLVSEYAANYVRGLQLTDSLDTNRLKVAACCKHYTAYDLDNWNGADRFHFDAQVTQQDLEDTYNPPFKNCVIDGQAASVMCSYNKVNGVPTCADPKLLNGVIRGEWGLNGYIVSDCDSAEVMYNTQHWTSTPERAAADIMESGLDVNCGNFLADHGEAAVKVGKLKETFIDTALFNSFTVQMRLGLFDGNPALQPYGNLGPGDVCSEQHQQLALEAARQGIVLLKNNNGALPLSPTQIRSLAVVGPNADVTNVMIGNYAGIPCRYTTPLQGLGKYTETIHKLGCENVACQSNSILLSEASEAATQADATVIIVGADQTVEAEGLDRVSLLLPGQQEQLVLDTADAARGTVILVVMSGGPMDISFARDNPKICGILWVGYPGQAGGDALADILFGQHNPGGRLPVTWYPEEFAIKVPMTNMNMRPDPATGYPGRTYRFYTGNSVYPFGYGLSYTTFSHSLVRAPKLVSLSLHEGLLKSCRGMNTSCASVEVENTKCQGLLFDLHADVHNTGSRDGDHVLLLFASPPAIQGIPQKRLMGFRKVHVGAGGTERVHFSIDVCKDLSVVDGRGVKQLLLGSHLLHVGDTKHTLRVEIE*

Protein Length: 772

Fln nts: ATGGGGTCAGAGAAGTCCCTGAACATCATGGCGCCAGGGATAATTATCACCTACAGCCTCTAATTATTTATTCAGTGTTTACAAGCCTTCCTCGTAAGTTTAGTAAATCTATAAATTTATGAATGGTGGCTACCGCCATCAACATTCTCAAAGAATCGCGGGTTTCTTCTGAGTCTGAGAGTTTGAAAGACTCTCAGATATTATTTC_-_ATGGGGCCTAGTGCAGTTCCAATTGCAGGTCTGATATTGTGGATATTGGTTTTTCGCTGTGGGATTCATGGGGAGCTCATGTTTGCTTGTGACAGTAGGATTCCCAATGCTGCCAATTACCCGTTCTGTAGCACGGCCCTGCCTATCAAAGACAGAGTTAATGATCTCATTGGGCGTCTTACATTAGAGGAGAAGATTCAACAGTTGGTGAGCAAGGCAGCTGGAGTTCCCAGGCTGGGAATTCCAGGCTATGAATGGTGGTCAGAAGCCTTGCACGGGGTTTCAAATGTTGGCCCTGGAACTCAGTTTGCAGCTGGGTCTATTCCTGCTGCTACAAGTTTTCCCCAAGTCATTCTTACTGCAGCTTCATTCAATATATCCCTCTGGGACGCCATAGGACAGGCGGTATCAACAGAGGCTCGTGCAATGTATAATACAGGATTGGCAGGATTGACATATTGGAGCCCTAATGTGAATATATTTCGTGATCCTAGATGGGGACGAGGTCAAGAGACTCCAGGAGAGGATCCTTTACTTGTTAGTGAATATGCCGCCAACTATGTGAGGGGATTACAATTAACAGATAGTCTGGATACTAACAGATTAAAGGTTGCTGCCTGCTGCAAACATTACACTGCCTATGATTTGGATAACTGGAATGGTGCTGATCGCTTTCATTTTGATGCCCAGGTTACACAACAGGACCTGGAGGACACTTACAATCCACCGTTTAAGAACTGCGTGATTGATGGCCAGGCTGCAAGTGTTATGTGTTCTTACAATAAAGTTAATGGAGTTCCAACCTGTGCAGACCCAAAGCTTCTCAATGGAGTTATTAGAGGAGAATGGGGATTGAATGGATACATAGTATCAGACTGTGATTCAGCAGAAGTTATGTACAACACCCAGCACTGGACTTCGACTCCTGAGAGAGCAGCGGCAGATATCATGGAGTCTGGATTGGATGTCAACTGTGGAAATTTCCTAGCGGATCATGGGGAAGCAGCAGTGAAGGTTGGGAAGCTGAAGGAAACCTTTATAGACACAGCTCTATTCAACTCTTTCACTGTTCAGATGCGCCTGGGATTATTTGATGGCAATCCAGCATTGCAGCCCTACGGTAATCTTGGACCTGGGGATGTTTGTAGTGAACAACATCAGCAGCTGGCCTTAGAGGCTGCAAGGCAGGGAATAGTTCTGTTAAAAAACAATAATGGAGCATTGCCATTATCCCCAACCCAAATCAGATCATTGGCTGTCGTTGGACCTAATGCAGATGTCACCAATGTCATGATTGGCAACTATGCAGGTATACCATGCAGATACACAACACCTCTACAAGGTTTAGGTAAATACACAGAAACTATACATAAGCTTGGCTGTGAAAATGTAGCCTGCCAAAGCAATTCTATACTATTAAGTGAAGCTTCCGAGGCAGCTACTCAAGCAGATGCCACAGTGATAATCGTAGGAGCAGACCAAACAGTAGAAGCAGAGGGGCTTGACAGAGTGAGCCTGTTATTGCCCGGACAACAAGAACAACTGGTATTAGACACAGCAGATGCAGCAAGAGGAACAGTGATATTAGTAGTAATGTCAGGGGGGCCAATGGACATTTCATTTGCCAGAGATAATCCGAAGATATGCGGCATTCTGTGGGTGGGATATCCGGGCCAAGCTGGAGGAGATGCATTGGCTGACATACTTTTTGGCCAGCACAATCCAGGTGGGAGATTGCCTGTAACATGGTATCCGGAAGAATTTGCAATAAAAGTACCCATGACAAACATGAACATGCGTCCTGATCCTGCAACTGGTTATCCCGGCCGAACATACAGATTTTACACAGGGAATTCAGTGTACCCATTTGGCTATGGACTGAGTTACACAACATTCTCTCATTCTTTGGTCCGCGCACCAAAGTTGGTTTCATTGTCCCTTCATGAAGGCCTACTTAAGTCATGCCGTGGAATGAACACTTCCTGCGCTTCGGTCGAAGTGGAGAACACCAAGTGCCAGGGATTACTCTTTGATCTTCATGCGGACGTGCATAACACAGGTAGCAGAGATGGAGATCATGTTCTGCTCCTGTTTGCCAGTCCTCCTGCTATTCAGGGAATTCCGCAGAAGCGTCTTATGGGCTTCAGAAAAGTCCATGTTGGTGCAGGAGGCACAGAAAGAGTGCATTTCAGCATTGATGTGTGCAAAGATCTGAGTGTTGTGGATGGGAGAGGTGTGAAGCAATTGCTTTTGGGTTCTCACCTTCTTCATGTTGGTGATACCAAGCATACCCTTCGTGTTGAAATTGAATGA___ATATGCCTCGAAAAGAGTAAGATCCCGAGTGGATTGTCCGACATCAGAGATCAGAGTGAAATTATTGAGCAACGACTCCTAAAAATTGGGTGTGGTTGCTGTGGTGTAGTGTAATAATTTGGAAGCTTGTGCAGGGTTAGGCTAGTGGAAGTTGGTAGAGCTTCATTGTTGCCTCTGCTGGGAAGTCTGCAAAGAGTTCTGACACCACTCTAATTGGAAAAAATTAAGCAGTGTTGGCTCTAAGTGGAAACATGCAGGAGTTTTAGTTCCCCTCTAATTGAAAAAACCAAACCATTGGGTGGTTCTTTTAAACAAAACTATTGGTTTCTGTTTATTATTGAAAAACCAATGTTCCTGATATTTATGATAGTAATGCATTTTCATGAAG

Fln Alignment:

sp_v1.1_unigene5182___LLSEASEAATQADATVIIVGADQTVEAEGLDRVSLLLPGQQEQLVLDTADAARGTVILVVMSGGPMDISFARDNPKICGILWVGYPGQAGGDALADILFGQHNPGGRLPVTWYPEEFAIKVPMTNMNMRPDPATGYPGRTYRFYTGNSVYPFGYGLSYTTFSHSLVRAPKLVSLSLHEGLLKSCRGMNTSCASVEVENTKCQGLLFDLHADVHNTGSRDGDHVLLLFASPPAI-QGIPQKRLMGFRKVHVGAGGTERVHFSIDVCKDLSVVDGRGVKQLLLGSHLLHVGDTKH
D5ABI5______________MFGEAVETAKKVDEVIVVVGLDQTQEKEERDRIKLTLPGQQENLVYQVSRAAKRPVVFVILSGGPVDVSFAVNDPQISSIIWAGYPGQAGGQALAEIIFGDYNPGGRLPMTWYPQDF-VKIPMTDMNMRPNHDTGYPGRTYRFYTGKKVFEFGQGLSYSAYSYNF-SSTTIQKIDLNVTMEHFEALGNRGKGHVRVENTPCRKLKFRSSIFVRNHDKMDGRHAVLLYSKSPATHKGAPQKQLIGFRSVHVQGKHTAKVTFVVKPCDHFSTVEENGQRLLAIGSHSLIVGDTQY

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
2728	20	80			1.0
2754			12	87	0.992554
2766			87	12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain