SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5178

Length: 1404 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5178

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] sp\|Q9SRM5.1\|CPR49_ARATH RecName: Full=GDSL esterase/lipase CPRD49; AltName: Full=Extracellular lipase CPRD49; Flags: Precursor gb\|AAF01505.1\|AC009991_1 unknown protein [Arabidopsis thaliana	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	protein	-	-	69%

Source	InterPros	Term	Type	Identity
Blast2go	Lipase, GDSL	IPR001087	-	69%
Blast2go	Esterase, SGNH hydrolase-type	IPR013830	-	69%
Blast2go	Esterase, SGNH hydrolase-type, subgroup	IPR013831	-	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNG4

Fln msg:

Fln protein: MAGHQRPLFVLFGASLTENAFQPGGWGASLADYYTRKADVLVRGYTGWNTRRAIAVLEKFFPKDHPSQPALVVVFFGSNDAAFPLPSGMGQSVPITEYKANLRQICAHIKGLSDTSRVVLVTPSPVFDEARRAYARRKWGSLAGNYPDRTNQRAQEYAEACIEVAKEMDVGVVDLWNAIQRTKDWETECLSDGFHLSPVGNQILLEELLKVLKNASWVPNLHWEYLPNDFDEPSIYDYIHPSTELASNDVQQSAV*

Protein Length: 257

Fln nts: CGTCGTGACCTTGGATGGGGATAATAGAGTGATTGGTATCGGGATTCGGAGGGAAGCGGAGGAGCGAGCATAGCGTTAGGGA_-_ATGGCAGGGCATCAGCGTCCATTGTTCGTGCTGTTCGGAGCATCTCTGACTGAAAATGCCTTCCAACCGGGAGGCTGGGGTGCCAGTTTGGCAGATTACTACACTCGGAAGGCTGATGTTTTGGTTAGGGGATACACTGGATGGAATACTCGTCGAGCTATTGCTGTATTGGAAAAGTTTTTCCCAAAGGATCATCCTTCTCAGCCTGCCTTAGTAGTAGTATTCTTTGGATCCAATGATGCTGCCTTTCCTCTTCCTAGTGGAATGGGTCAAAGTGTGCCAATCACAGAGTACAAAGCAAATCTTCGACAAATATGTGCACATATCAAGGGTCTTTCAGATACATCTCGTGTGGTTCTTGTAACTCCTTCACCTGTGTTTGATGAAGCACGCCGAGCTTATGCCAGACGCAAGTGGGGTAGCCTTGCTGGTAATTACCCAGATCGTACAAATCAACGTGCGCAGGAGTATGCTGAAGCCTGTATAGAAGTGGCAAAGGAGATGGATGTCGGCGTGGTAGATCTCTGGAATGCTATTCAAAGAACAAAGGACTGGGAGACAGAATGTCTGAGTGATGGGTTCCATTTGAGCCCTGTTGGCAACCAAATTCTGCTTGAGGAGCTTTTGAAGGTATTGAAGAATGCTAGTTGGGTTCCAAATTTGCATTGGGAGTACCTGCCAAATGACTTTGATGAGCCTTCCATATATGATTATATACACCCATCTACAGAATTGGCATCAAATGATGTCCAACAATCTGCAGTATAG___TGAATTGAGTGTATATGGAGGTTTTAGAATCTTTCTCAAACTATGCACAGTTTTCAATAATTATTGAGGCTTCTGTTATGATTTATCTTTATGTGGTCATTAGTAAGAAAGTTGTTAGTAACAATAAGTAAATGATACAAGTCAAATGTGGACTATGGCTATGGTACAAAGGCCTAGTGTATTTTTCTGGTTGGGGGACCTATTTAAGCTATACCTGTCTAAATGCAAGTCCTCCATCCACCATTTGAGTGACATATAATAAAGAGCATGGCAGGCTAAGCTCTTATAAAAAATTGTAATTGACAGTTCTCACAAGAAACTCAGAACTGAAAATTTCCAATTCATGCATGTTAATCACGATTTAGAAGCCAATAAGAAGGTCAAATATTAAGGTGGCTGCTGCAATAACATCAATATGCATTTTTCATTTTTATCCAAAGAATGGATACATGCAGTTCAGTTGAGATGCACAGTACGCAGCAAGCTGTACAGCCAAACAACTGAGTATCTACTTTTGCACTATCTGATGCAGAGTATAATGCATAATATATTTC

Fln Alignment:

sp_v1.1_unigene5178___QRPLFVLFGASLTENAFQPGGWGASLADYYTRKADVLVRGYTGWNTRRAIAVLEKFFPKDHPSQPALVVVFFGSNDAAFPLPSGMGQSVPITEYKANLRQICAHIKGLSDTSRVVLVTPSPVFDEARRAYARRKWGSLAGNYPDRTNQRAQEYAEACIEVAKEMDVGVVDLWNAIQRTKDWETECLSDGFHLSPVGNQILLEELLKVLKNASWVPNLHWEYLPNDFDEPSIYDYI
B8LNG4______________RRPLFVLFGSSIVQYSFANGGWGAALADIYARKADILVRGYSAWNSRRALQVIDQIFPKDAIEQPSLIIVYFGGNDSVGPHTSGLGPHVPLSEYIDNMRKIATYLKELSESTRLIFLSCPPINEDMLNNDSSSILSPIV-----RTNEASRHYSEACIEVCKDMDLKVVDLWSAIQTRPDWRTSCFTDGIHFSAEGSVIVVEEILKVLKEAEWEPSLHWKSIPAEFGESSPYDVV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1232		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain