SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5152

Length: 2273 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene5152
TGTATCGACCTTGGCTGTCACTCAATTTTTTTCTGACCTGGAAATTCCTATCAGCTTCGCTCATCATTGACTTGTTGGGTTCAGAAGGTCTTGACTTTGTCTGTGATTTATTTTTTGACTTGTATTTCTCTATTAAAGAATTGCGAGATATGCAGAATCTCGATAGGCATGTTGTATTACCATCGGTATAGCGCCAGTTGTTACTGGCAAGGACTTTGCAATATTGAATCCGATAGGCAGTAATATATGTGACCGCTGTTTTGACCCGGCCCCTCTGATTTCGCACTGCACGATTCTGAGATCCAAAGGCCTGCACTGACTTTGACTAATCACGAGATCCTTTGCACTCGAATATTGTTGCGTACACCATGAAATCTCTGAAAATTCTTGATACGTCGTGACCTTGGCTGTCACTCAGTTTTGTGTTGGGAAGGTTACGTCCTGGGGATTGTATTTCGTGAACGGAATACATACCTAGGTGCGTGAAACGCCAGGGAACTACATTTTCTCAATTCTTGGTGCTCATTTCAGTCGCTTTCCAGGCTGAGGGTAATATAGCTTGTATCGCCATTATCTTCTTGGAATTCCTTGTACTGATCGAATAAAAGAGAAGGCCGGCCTTGTTGAACAGTATATTCAATTTTAGAAAGTTACAGGAATGGCAGCTGCCAATAGTCAATCGTGTGTTCCTCCGGGGTTTAGGTTTCATCCCACAGACGAAGAACTTCTGCATTACTACTTGAGGAAGAAGGTCTCTTATGAGATGATTGACCTCAATGTTATTCGGGATGTCGATCTGAACAAACTTGAGCCCTGGGATCTCCATGAGACATGCAAAATTGGGTCTGCTCCACAGGATGAATGGTACTTCTTCAGTCATAAAGACAAGAAATACCCAACGGGCACTCGCACTAATAGAGCAACAGCTGCAGGCTTCTGGAAGGCAACTGGCAGGGATAAAATCATATTTATGAACTGTAAGCGAATTGGCATGAGGAAAACACTTGTATTCTACACAGGACGAGCCCCTCATGGCCAAAAAACAGAATGGATTATGCATGAATACCGTCTAGATGACAAGGAAAAACTACAGGTAAATGAGGATGGATGGGTTGTGTGCCGTGTATTCAAGAAAAGGATGCACAACAAAGACGCCAAAGACATTAACACTGAACGTGAACGTTCAAGTCCAAGTGGAAATGATGAAGAAAGAAGTGCTCATGCCCTACCACAGCTCATGGATTTCCCCTCTGGGGAGCAAGTGCTCCATCAATATAATCACCAACATCTTGACCTAGGCAAGCCACCACCTCAAGCAAGATACAGTTTTTCCCATGATTTATTTGCTCAGATGTCAGATTTAAAACCCCTAGATGGGGCCACCTGCAACCCTAGTTCTACAGTTATCAAAAGCTTCATTCCACAAAGCCTGCTACACATGAATAACTCAAGGCGCCCCCAGTCAATCAATATGCTTATGGGGCATCTTCCCGAAGGACCACAGATTAAGCTCACTGCAAACGACTTTAGGGAAGATCAGCGTTCAAATGATTGGACTTTGTTGGACAGTCTTATGGGCTCCCATGTCGATCAAACAGAGCCAAATAAACAAATGAGATATAACGATCATCCCCAGGCTTTGGATGGATCTTCACATGGATTGGCACTTGGGGTTAACCGATATGATAATAATCACTATTCCAGCGCTGGAATCGAATACTGGAACTTCGAAAAATAAAGCCGGACCATATAAGGTCGTAATGGGGATTATGGCATATGGAACAGCGCCTTCGATTTTAGCCATTCTTGCAAGTTTACACAGTCAACGATATATGTTTACTATTGAATATGTATATAGTATTGTACTGCCAAGTGTTTTTTCTACTAGCGTTATGCAATATTTTTTTGCATCATATAGCTGAGCAGGTTGATGTAACCTTAATAATATCTATGCTGGATACTGTACCCAAATTCTTATATTTAGCTTTCCGTTTTGCAGAAACAAAATAAAGTGCTGTGCTTGTTTAAAGTCGCTTGCTTGATAGGGCGTCGGCTTCTTGATCTTGAGCCAATTGGGTATATAGGGAAGAAGCGTTAATGTGAGTAACAGTACTCTCATTTTAACATATTTATGTGATAAAGGATTTTTTAGTTGTACAGATCTATTTTGGGGAAGAGTTAATGTGAGTGGGTATTTTTTAATCTGTAAATATCTAGTTCGGAGGGTTAATGATTCAGCTTCGAACAGACTTCTTTATAAAGGTTGGCATATA

Ace file of the UniGene sp_v1.1_unigene5152

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	No apical meristem (NAM) protein n=1 Tax=Medicago truncatula RepID=A2Q3I9_MEDTR	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	nac domain ipr003441	-	-	65%

Source	GOs	Term	Type	Identity
Blast2go	positive regulation of cell fate commitment	GO:0010455	Biological Process	65%
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	65%
Blast2go	secondary cell wall biogenesis	GO:0009834	Biological Process	65%
Blast2go	root cap development	GO:0048829	Biological Process	65%
Blast2go	Cajal body	GO:0015030	Cellular Component	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	No apical meristem (NAM) protein	IPR003441	-	0.0	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLZ9

Fln msg: your sequence is shorter than subject: 360 - 392

Fln protein: MAAANSQSCVPPGFRFHPTDEELLHYYLRKKVSYEMIDLNVIRDVDLNKLEPWDLHETCKIGSAPQDEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIFMNCKRIGMRKTLVFYTGRAPHGQKTEWIMHEYRLDDKEKLQVNEDGWVVCRVFKKRMHNKDAKDINTERERSSPSGNDEERSAHALPQLMDFPSGEQVLHQYNHQHLDLGKPPPQARYSFSHDLFAQMSDLKPLDGATCNPSSTVIKSFIPQSLLHMNNSRRPQSINMLMGHLPEGPQIKLTANDFREDQRSNDWTLLDSLMGSHVDQTEPNKQMRYNDHPQALDGSSHGLALGVNRYDNNHYSSAGIEYWNFEK*

Protein Length: 361

Fln nts: TGTATCGACCTTGGCTGTCACTCAATTTTTTTCTGACCTGGAAATTCCTATCAGCTTCGCTCATCATTGACTTGTTGGGTTCAGAAGGTCTTGACTTTGTCTGTGATTTATTTTTTGACTTGTATTTCTCTATTAAAGAATTGCGAGATATGCAGAATCTCGATAGGCATGTTGTATTACCATCGGTATAGCGCCAGTTGTTACTGGCAAGGACTTTGCAATATTGAATCCGATAGGCAGTAATATATGTGACCGCTGTTTTGACCCGGCCCCTCTGATTTCGCACTGCACGATTCTGAGATCCAAAGGCCTGCACTGACTTTGACTAATCACGAGATCCTTTGCACTCGAATATTGTTGCGTACACCATGAAATCTCTGAAAATTCTTGATACGTCGTGACCTTGGCTGTCACTCAGTTTTGTGTTGGGAAGGTTACGTCCTGGGGATTGTATTTCGTGAACGGAATACATACCTAGGTGCGTGAAACGCCAGGGAACTACATTTTCTCAATTCTTGGTGCTCATTTCAGTCGCTTTCCAGGCTGAGGGTAATATAGCTTGTATCGCCATTATCTTCTTGGAATTCCTTGTACTGATCGAATAAAAGAGAAGGCCGGCCTTGTTGAACAGTATATTCAATTTTAGAAAGTTACAGGA_-_ATGGCAGCTGCCAATAGTCAATCGTGTGTTCCTCCGGGGTTTAGGTTTCATCCCACAGACGAAGAACTTCTGCATTACTACTTGAGGAAGAAGGTCTCTTATGAGATGATTGACCTCAATGTTATTCGGGATGTCGATCTGAACAAACTTGAGCCCTGGGATCTCCATGAGACATGCAAAATTGGGTCTGCTCCACAGGATGAATGGTACTTCTTCAGTCATAAAGACAAGAAATACCCAACGGGCACTCGCACTAATAGAGCAACAGCTGCAGGCTTCTGGAAGGCAACTGGCAGGGATAAAATCATATTTATGAACTGTAAGCGAATTGGCATGAGGAAAACACTTGTATTCTACACAGGACGAGCCCCTCATGGCCAAAAAACAGAATGGATTATGCATGAATACCGTCTAGATGACAAGGAAAAACTACAGGTAAATGAGGATGGATGGGTTGTGTGCCGTGTATTCAAGAAAAGGATGCACAACAAAGACGCCAAAGACATTAACACTGAACGTGAACGTTCAAGTCCAAGTGGAAATGATGAAGAAAGAAGTGCTCATGCCCTACCACAGCTCATGGATTTCCCCTCTGGGGAGCAAGTGCTCCATCAATATAATCACCAACATCTTGACCTAGGCAAGCCACCACCTCAAGCAAGATACAGTTTTTCCCATGATTTATTTGCTCAGATGTCAGATTTAAAACCCCTAGATGGGGCCACCTGCAACCCTAGTTCTACAGTTATCAAAAGCTTCATTCCACAAAGCCTGCTACACATGAATAACTCAAGGCGCCCCCAGTCAATCAATATGCTTATGGGGCATCTTCCCGAAGGACCACAGATTAAGCTCACTGCAAACGACTTTAGGGAAGATCAGCGTTCAAATGATTGGACTTTGTTGGACAGTCTTATGGGCTCCCATGTCGATCAAACAGAGCCAAATAAACAAATGAGATATAACGATCATCCCCAGGCTTTGGATGGATCTTCACATGGATTGGCACTTGGGGTTAACCGATATGATAATAATCACTATTCCAGCGCTGGAATCGAATACTGGAACTTCGAAAAATAA___AGCCGGACCATATAAGGTCGTAATGGGGATTATGGCATATGGAACAGCGCCTTCGATTTTAGCCATTCTTGCAAGTTTACACAGTCAACGATATATGTTTACTATTGAATATGTATATAGTATTGTACTGCCAAGTGTTTTTTCTACTAGCGTTATGCAATATTTTTTTGCATCATATAGCTGAGCAGGTTGATGTAACCTTAATAATATCTATGCTGGATACTGTACCCAAATTCTTATATTTAGCTTTCCGTTTTGCAGAAACAAAATAAAGTGCTGTGCTTGTTTAAAGTCGCTTGCTTGATAGGGCGTCGGCTTCTTGATCTTGAGCCAATTGGGTATATAGGGAAGAAGCGTTAATGTGAGTAACAGTACTCTCATTTTAACATATTTATGTGATAAAGGATTTTTTAGTTGTACAGATCTATTTTGGGGAAGAGTTAATGTGAGTGGGTATTTTTTAATCTGTAAATATCTAGTTCGGAGGGTTAATGATTCAGCTTCGAACAGACTTCTTTATAAAGGTTGGCATATA

Fln Alignment:

sp_v1.1_unigene5152___AANSQSCVPPGFRFHPTDEELLHYYLRKKVSYEMIDLNVIRDVDLNKLEPWDLHETCKIGSAPQDEWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKIIFMNCKRIGMRKTLVFYTGRAPHGQKTEWIMHEYRLDDKEKLQVN------EDGWVVCRVFKKRMHNKDAKDINTERERSSPSGNDEERSAHALPQLMDFPSGE--QVLHQYNHQHLDLGKPPPQARYSFSHDLFAQMSDLKPLDGATC-NPSSTVIKSFIPQS------LLHMNNSRRPQS--INMLMGHLPEGPQIKL--TANDFR---EDQRSNDWTLLDSLMGSHVDQTE---PNKQMR-------YNDHPQALDGSSHG-------LALGVNRYDNNHYSSAGIEYWNFEK
B8LLZ9______________SVNGQSRVPPGFRFHPTEEELLYYYLKKKVSFEKIDLDVIRDVDLNKLEPWDIQERCKIGSTPQHDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIHTNLKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLDDAEYPQANTFNELQEDGWVVCRVFKKRNHHK-----SQESAELSPKYGSKQFSNNKILSDSDCPSDNLTDPLH-YTHQLNMCKQELEMQQYAFPHDQFMQLPQLESPKIPTCNNPPSSGIKRFFPDSRSGFFQLENITSSKRPCSYPMNLDMTEL-EGSTVTTHDHMTDFKPAEEVQNLQDWTVLDRLVASHLNGQEIETPKLGIRSYGAPNSSSDHQALVDAATVSGDQLTLLPQLRINRLNPHDYASCEIDLWNFVK

SNPs (tot: 158)

Position	A %	C %	G %	T %	Probability
143	60	40			1.0
144	60		40		1.0
146		40		60	1.0
148		60		40	1.0
151		40	60		1.0
152	60	40			1.0
154	60			40	1.0
155			40	60	1.0
158	60			40	1.0
160	60			40	1.0
161	60	40			1.0
162	40			60	1.0
166	20		60		0.99255
179		40		60	1.0
384	40			60	1.0
399	22	77			1.0
403			77	22	1.0
407		77	22		1.0
409	22			77	1.0
410	22			77	1.0
411		22	77		1.0
412		17	82		1.0
414	12			87	0.999964
415		12	87		0.999964
417		87		12	0.999964
595		21		78	1.0
654	60	40			1.0
657		40		60	1.0
658	60		40		1.0
659		60		40	1.0
660	60		40		1.0
661	40		60		1.0
662		40	60		1.0
663	40	60			1.0
664	60			40	1.0
669	66			33	1.0
670			83	16	0.994512
673	33			66	1.0
674		33	66		1.0
675		66		33	1.0
677	75	25			1.0
678	75		25		1.0
680	75	25			1.0
684	75		25		1.0
686		25		75	1.0
688			75	25	1.0
693		25		75	1.0
696		75	25		1.0
701			75	25	1.0
702		25	75		1.0
703	25		75		1.0
719		81	18		0.999994
720	81			18	0.999994
722	81			18	0.999994
726		18	81		0.999994
727	81			18	0.999994
728	81			18	0.999994
731	81		18		0.999994
737		18	81		0.999994
738	18	81			0.999994
765		13		86	0.999973
766	86		13		0.999973
770		13	86		0.999973
771	86			13	0.999973
774	86		13		0.999973
775		13		86	0.999973
778	86			13	0.999973
922	90		10		0.90298
925		10	90		0.90298
929	90			10	0.90298
930	90	10			0.90298
931	10	90			0.90298
1050	33		33		0.997753
1053	75	25			0.996473
1055	80			20	0.995493
1056	80	20			0.995493
1057			20	80	0.995493
1058			80	20	0.995493
1061		20		80	0.995493
1062		20		80	0.995493
1063	80			20	0.995493
1066		80	20		0.995493
1067	80	20			0.995493
1071	80			20	0.995493
1072		20		80	0.995493
1076	20		80		0.995493
1111			80	20	0.995493
1112	80			20	0.995493
1115		20	80		0.995493
1120	20		80		0.995493
1295	80		20		0.999996
1298			20	80	0.999996
1305	80			20	0.999996
1309	80			20	0.999996
1312		80		20	0.999996
1392		87	12		0.992554
1395		87		12	0.992554
1396	87		12		0.992554
1400		87		12	0.992554
1402	87		12		0.992554
1404		12		87	0.992554
1406		85	14		0.993533
1411		14	85		0.993533
1413		14		85	0.993533
1458	85		14		0.993533
1459	85			14	0.993533
1461	14		85		0.993533
1463		14	85		0.993533
1464		85		14	0.993533
1465		85		14	0.993533
1466		85	14		0.993533
1467		85	14		0.993533
1469	85			14	0.993533
1474	85	14			0.993533
1485		12		87	0.992554
1486	87		12		0.992554
1488		12	87		0.992554
1490			87	12	0.992554
1494		12		87	0.992554
1498		87	12		0.992554
1500		50		50	1.0
1502	87			12	0.992554
1503	87	12			0.992554
1504	11	11	77		0.968132
1505		11	88		0.923564
1506	77			22	0.999999
1508	11	77	11		0.968132
1509	88			11	0.923564
1512		16	75	8	0.99999
1513	75	16			0.99999
1516	83		16		0.999991
1530	88	11			0.923564
1531	88			11	0.923564
1533	11		88		0.923564
1569			10	90	0.90298
1571		10	90		0.90298
1572	10			90	0.90298
1574		10	90		0.90298
1641		69	15	11	1.0
1642	15	61	19	3	1.0
1643		76		23	1.0
1645	76		7	15	1.0
1646		11	65	23	1.0
1647			88	11	1.0
1648	7	11	15		1.0
1649	10	89			1.0
1650		7	3	89	0.998606
1651			17	82	1.0
1653		17	82		1.0
1654	14	3	82		1.0
1655	78	21			1.0
1657		17	82		1.0
1658		3	82	3	1.0
1751	36		60		1.0
1901	30		69		1.0
2002	46		46		1.0
2077			56	43	1.0
2170	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain