SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5151

Length: 1083 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene5151 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytokinin dehydrogenase, putative (EC:1.5.99.12)	-	-	46%
FL-Next	sp=Cytokinin dehydrogenase 3; Oryza sativa subsp. japonica (Rice).	-	-	47%
Blast2go	cytokinin oxidase	-	-	63%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cytokinin dehydrogenase.	EC:1.5.99.12	-	0.0	63%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Zeatin biosynthesis	00908		0.0	63%

Source	GOs	Term	Type	Identity
Blast2go	meristem development	GO:0048507	Biological Process	63%
Blast2go	cytokinin catabolic process	GO:0009823	Biological Process	63%
Blast2go	cytokinin dehydrogenase activity	GO:0019139	Molecular Function	63%
Blast2go	vacuole	GO:0005773	Cellular Component	63%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q8LNV6

Fln msg: your sequence is shorter than subject: 317 - 527

Fln protein: QFGIITRARIILEPAPQKVKWVRALYSDFEQFTRDQELLVSMDDGAASVDYLEGFVVVNNEAMRSWSISFPTDTPLDDSVFNDAGTEILFCIEIAKYFTQSDDETADVDKVTGRIISRLSFIPGLIYSVEVPYVDFLNRVRVEELNLRSRGLWDVPHPWLNMFVPRRQIQRFTTSLLKIMSPDTVKGPILVYPVKRSKWNTNMSAVIPEDKDEIFYAVGVLRSADPLCLAGSSCLNDLLSQNQQIIDVLTLAVELGNDKSEPGMGAKQYLAHHSQEWQWKNHFGSKWGIFLQRKARYDPLNILAPGQRILNRNHRA*

Protein Length: 318

Fln nts: CAGTTCGGCATCATAACCCGAGCTCGGATTATCCTCGAACCTGCTCCTCAGAAAGTGAAATGGGTTAGAGCCTTATACAGTGATTTCGAGCAGTTCACAAGGGACCAAGAGCTCCTGGTGTCCATGGACGATGGCGCGGCATCTGTAGATTACTTAGAAGGCTTCGTGGTCGTTAACAACGAAGCAATGCGCAGCTGGTCGATCTCGTTCCCCACTGACACACCGCTCGATGACAGCGTCTTCAACGACGCTGGAACCGAGATTCTGTTTTGTATTGAGATAGCAAAGTACTTTACACAATCCGACGACGAGACAGCCGATGTCGACAAGGTCACGGGGCGGATTATCTCGAGATTGAGTTTCATTCCTGGGTTGATTTACAGCGTGGAAGTACCCTACGTCGATTTCCTGAACCGAGTACGAGTGGAGGAGCTGAACCTGCGATCTCGAGGCCTCTGGGACGTCCCGCATCCATGGTTGAACATGTTCGTCCCACGGCGCCAGATTCAACGTTTCACCACTTCTCTGCTCAAGATCATGTCTCCGGACACTGTCAAGGGCCCGATACTCGTCTACCCTGTGAAAAGAAGCAAGTGGAATACCAACATGTCTGCAGTAATACCTGAGGACAAAGACGAGATCTTTTACGCAGTAGGCGTTCTTCGATCCGCGGACCCACTGTGCTTGGCCGGGTCTTCCTGCTTAAACGATTTGCTATCACAGAACCAGCAAATAATCGATGTCTTGACCTTGGCTGTCGAGCTTGGCAACGATAAGAGCGAACCAGGCATGGGCGCGAAGCAATACTTAGCCCACCATTCCCAGGAATGGCAGTGGAAGAATCATTTTGGGAGCAAATGGGGAATATTTCTGCAGAGAAAGGCGAGATACGATCCTCTGAACATTCTCGCTCCAGGACAAAGGATTCTCAATAGAAACCACCGAGCATGA___CCTGACCATGATGATCTGTCCAAGGAAACCAGAGATCTCGCTAACAGCAAGGCCAGTAGTATAATGAATACAGTAAAATATTATATTTTTATTTCTGTCCTCCCTGTAAGATCCCTGGCACATAATTACAAT

Fln Alignment:

sp_v1.1_unigene5151___QFGIITRARIILEPAPQKVKWVRALYSDFEQFTRDQELLVSMDDGAASVDYLEGFVVVNNEAMRSWSISFPTDTPLDDSVFNDAGTEILFCIEIAKYFTQSDDETADVDKVTGRIISRLSFIPGLIYSVEVPYVDFLNRVRVEELNLRSRGLWDVPHPWLNMFVPRRQIQRFTTSLLKIMSPDTVKGPILVYPVKRSKWNTNMSAVIPE--DKDEIFYAVGVLRSADPLCLAGSSCLNDLLSQNQQIIDVLTLAVELGNDKSEPGMGAKQYLAHHSQEWQWKNHFGSKWGIFLQRKARYDPLNILAPGQRILNRN
Q8LNV6______________QFGIITRARILLQEAPQKVKWVRAFYDDFATFTKDQELLVSMP---VLVDYVEGFIVLNEQSLHSSSIAFPTNVDFNPDFGTKNNPKIYYCIEFAVHDYQN--KNINVEQVVEVISRQMSHIASHLYSVEVSYFDFLNRVRMEEMSLRNSGLWEVHHPWLNMFVPSAGISDFRDLLMDSISPDNFEGLILIYPLLRHKWDTNTSVVLPDSGSTDQVMYAVGILRSANPDDGCSHHCLQELLLRHRRLAGA-----------AASGLGAKQYLAHHPTPAGWRRHFGRRWERFADRKARFDPRCILGPGQGIFPRD

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
177		20	80		0.995493
178	80	20			0.995493
203		25		75	0.996473
204	25			75	0.996473
282			66	33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain