SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5125

Length: 1475 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5125

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cyclin d, putative n=1 Tax=Ricinus communis RepID=B9SZY3_RICCO	-	-	7.00649e-44	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	protein	-	-	0.0	57%

Source	InterPros	Term	Type	Identity
Blast2go	Cyclin, C-terminal	IPR004367	-	57%
Blast2go	Cyclin, N-terminal	IPR006671	-	57%
Blast2go	Cyclin-like	IPR013763	-	57%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9Y7

Fln msg: Unexpected stop codon in the beginning of your sequence,

Fln protein: S*PWLSLNVGSCSTLPFAVPEDYDEAIKICLEKESAFMPSVGYYLQHLRASELCDARRAAVFWMNKVGSHFKFKALIISSAVNHLDRFLWKNRHDQAWKSWMMELVSMGCLSIAAKMDEVNVPRILDFQVEGIDHMFESYTLQRMELYIMKALGWRMNPVTPFSYTEAMAQHLRFDCIVRTSIVSRVTELLLGSLFEEEFVEFRPSIVALAAMFCALEELVPLQAEPHITELSRFLNAEKVDLQKCYRFMEERIVDPLPPSLSSSRLNGKPKFPTSPVTVIQKVPENRNNGVMLKCSLQESSTQFHLPSSSNSRLQEKRKKSPTTRDNKYRKKGSCVNSHHL*

Protein Length: 344

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACGTGGGTTCTTGTTCGACATTGCCCTTTGCTGTACCTGAAGATTACGATGAAGCGATTAAAATCTGTCTAGAGAAGGAGTCGGCCTTTATGCCAAGTGTAGGCTATTATTTGCAACATCTTAGGGCCAGTGAATTATGTGACGCAAGGAGGGCGGCAGTCTTTTGGATGAATAAGGTTGGCAGTCATTTTAAATTTAAGGCTCTGATAATTTCTTCAGCCGTTAACCATCTGGATCGTTTTTTGTGGAAGAACCGTCATGATCAGGCCTGGAAATCTTGGATGATGGAATTGGTATCAATGGGATGTTTGTCAATCGCAGCAAAGATGGATGAAGTAAATGTTCCACGTATCTTGGATTTTCAGGTTGAAGGCATAGATCACATGTTCGAATCATATACATTACAGCGGATGGAACTCTACATAATGAAAGCACTTGGATGGCGGATGAACCCTGTGACGCCCTTTTCTTACACGGAGGCAATGGCTCAACACCTGCGGTTTGACTGCATCGTCAGAACCTCCATAGTCTCCCGTGTAACAGAGCTTCTGCTCGGAAGTCTATTTGAAGAGGAATTTGTGGAATTTCGGCCCTCCATAGTTGCTTTAGCTGCCATGTTTTGTGCGTTGGAAGAGCTGGTTCCGTTGCAGGCCGAGCCCCATATTACTGAGCTCTCCAGATTTCTCAACGCAGAGAAGGTGGATTTGCAAAAATGCTACCGGTTTATGGAAGAGAGGATCGTAGATCCCTTGCCTCCATCCCTGTCTTCCAGCCGTCTTAATGGAAAACCCAAATTTCCGACGAGTCCTGTGACCGTAATCCAAAAAGTACCGGAAAATAGAAATAATGGAGTAATGCTGAAGTGCTCCCTACAGGAAAGCTCGACCCAGTTTCATTTACCCAGCAGCTCCAATTCAAGATTGCAGGAGAAAAGAAAGAAGTCCCCCACCACCAGAGACAATAAGTACAGAAAGAAGGGAAGTTGTGTCAATTCACATCATCTGTGA___GTTAAACTGAATATCTTGATACAGTTAGAGTTTTGAGTTAAACTGAATACATTGATACAGTTAAGAGTTGTTGGGATTTAGAACATGTATGGAAGAATAATGCTCTAATTACCAACACTTTCCAAGAAATTACAATTCAACGAGATCTCTGTCCTTGAGATCTTAATTGTTATTCAAAACATTCTAAGAAAGCGATAGTATATTGGGTCAAGTGTGAGTTTGGGAGTGTGCTTCTGATGAAGTGATTTTGTAGGGTGGGAGTGTGCTTCTGAGAGAGCGATTTTGTAAAGTGGGAGTGTGGTGTGAGGTTGCTGGAGTCGAGTTAATTTGTGTTTTTTCATGATTGCTACATGAAACGGAATCGATTGCGAGATGCTGGGTTTATGAAACTTTAACTCTCATAAAACTCGTTATTTTCTCATTATATAAAGATTTTTAATTTTC

Fln Alignment:

sp_v1.1_unigene5125___VPEDYDEAIKICLEKESAFMPSVGYYLQHLRASEL-CDARRAAVFWMNKVGSHFKFKALIISSAVNHLDRFLWKNRHDQAWKSWMMELVSMGCLSIAAKMDEVNVPRILDFQVEGIDHMFESYTLQRMELYIMKALGWRMNPVTPFSYTEAMAQHLRFDCIVRTSIVSRVTXXXXXXXXXXXXXXXRPSIVALAAMFCALEELVPLQAEPHITELSRFLNAEKVDLQKCYRFMEERIVD
D5A9Y7______________LPTEDDESISFLVEKECDHMPQDGY-LQRFQSRTLDVSVRQDGLSWILKVHAYYNFGPLTAYLAINYLDRFLSSYQMPQG-KAWMLQLLSVSCLSLAAKMEETHVPLLLDLQIEDAKYVFEARTIERMELLILTTLKWRLRSITPFSFLHYFVHRAAGDQSPPRALITRSIELIVATIRVIHLVGHRPSSIAAAAVMCAAEEVVPLLALDYKRALCR-ASEHKETIYSCYTVMQEMLID

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
856	13	86			0.999973
1002			85	14	0.999981
1005	84	15			0.999986
1040		13	86		0.999973
1041	86		13		0.999973
1042	86			13	0.999973
1043			13	86	0.999973
1045		13		86	0.999973
1050	86	13			0.999973
1052	86			13	0.999973
1055		14	85		0.999981
1057		14		85	0.999981
1117		10		90	0.90298
1120	90	10			0.90298
1121			10	90	0.90298
1122			90	10	0.90298
1125	90	10			0.90298
1126		10	90		0.90298
1127	90			10	0.90298
1128	90			10	0.90298
1129			10	90	0.90298
1130	90		10		0.90298
1131	90	10			0.90298
1135	10			90	0.90298
1183	12			87	0.992554
1189	87	12			0.992554
1190			87	12	0.992554
1191	87		12		0.992554
1194		14		85	0.993533
1196	85	14			0.993533
1366	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain