SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5116

Length: 1768 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5116

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	protein	-	-	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PTA1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 317 aas, your sequence is shorter than subject: 450 - 946

Fln protein: RRDLGCHSGFGGDFCGLRLNNAYVALQAWKKAISDDPLGITKTWVGHDVCNYTGVFCAPALDKSCDRVVAGIDLNHGMLKGLLVEELGMLTDIALFHLNTNRFSGVVPLSLKSLTLLAELDVSNNQLSGNFPTVVLELQSLVYLDLRFNFFTGSLPAELFNKKEMDAIFVNNNYFEDKIPDNLGNSPVSVVSFANNKLTGSIPSNVGNMAQRLNEVLFLNNALSGCLPEETGMLDQLNVLDVSFNDIGGQVPLSLGCLGNIEQLILARNEFCGSIPDVICSIRSLQNLTVSYNYFTAEGASCPSLPSRGVPFDDSQNCIPGRPLQRSQQECAAFRAQPKTCTDLSFSHLQCSLPPPIISPPPPPTPLQVPAVRYSSPPPPAALTVPAIRYASPPPPVPLAIPAIRYASPPPPVPLAIPAIRYASPPPPSTNLVPPPIQNCNPPLSPPFH*

Protein Length: 451

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGATTTGGTGGTGATTTTTGTGGGTTAAGGCTGAATAATGCATATGTAGCACTGCAGGCATGGAAGAAGGCCATTAGTGATGATCCCCTGGGCATCACTAAGACTTGGGTAGGACATGATGTTTGCAATTACACAGGGGTTTTCTGTGCACCTGCCTTAGACAAATCATGTGACAGAGTTGTTGCTGGGATTGACTTGAATCATGGAATGCTTAAAGGCTTATTGGTTGAGGAACTGGGCATGCTCACTGATATTGCTCTCTTCCATCTCAATACCAATCGTTTCAGTGGGGTCGTTCCTCTTAGCTTAAAGAGTCTCACACTTCTCGCAGAGCTGGATGTCAGTAACAACCAACTCTCAGGGAATTTCCCTACTGTGGTTCTGGAACTGCAGAGTCTGGTGTATTTGGATCTGAGATTCAATTTCTTTACAGGTTCTCTTCCTGCAGAGCTCTTCAACAAGAAGGAGATGGATGCTATCTTTGTGAATAACAACTATTTTGAAGATAAAATTCCTGACAACTTGGGGAACTCTCCAGTCTCTGTGGTGAGCTTTGCCAATAACAAGCTGACTGGAAGCATTCCTAGCAATGTTGGCAACATGGCCCAGAGGCTGAATGAGGTGCTGTTTCTCAACAATGCACTGTCTGGATGCTTGCCAGAGGAAACAGGGATGCTGGATCAGCTCAATGTGTTGGATGTGAGCTTTAATGACATAGGAGGTCAGGTTCCATTATCTCTTGGCTGTCTAGGTAACATTGAGCAGCTCATTCTGGCTCGCAATGAATTCTGTGGATCCATTCCTGATGTGATTTGCTCAATAAGAAGCCTCCAGAACCTTACTGTTTCCTACAATTATTTCACAGCAGAGGGTGCAAGCTGCCCCTCACTTCCAAGCAGGGGAGTGCCATTTGATGATTCACAGAATTGCATTCCTGGTCGTCCTCTTCAGAGATCACAGCAGGAATGTGCTGCATTTCGTGCCCAACCCAAGACTTGTACTGATCTGTCTTTTTCTCATCTGCAATGTTCACTACCACCTCCCATTATATCACCGCCACCACCACCTACTCCTCTTCAAGTACCTGCTGTGAGATATTCTTCACCGCCACCTCCTGCTGCTCTCACAGTACCTGCAATCAGATATGCATCCCCACCACCTCCTGTTCCTCTTGCAaTTCCTGCAATCAGATATGCATCCCCACCACCTCCTGTTCCTCTTGCAATTCCTGCAATCAGATATGCATCCCCACCACCACCTTCAACCAATCTAGTCCCTCCACCAATCCAAAACTGTAATCCTCCCCTTTCTCCACCCTTCCATTAACGGTTAAACACTGCAGATACTTTGTTCTGAAGTCAACATACAGGAAATAATTGTGTTTTGGGCAGCAGAATAGTTTGAAGTCCGAACAGAAGATTCAATGTAGTATTTTTATGGAAGAGCTGGCATATTGCTTTCAGTTAAGGATCTGATGGCAATATATAACTAAGAGATTCATGGCTTCTCCACTACCTACTGTGTGTGTCTAATCAACTAATAGTGATAACCATCCTATTCATTTTGCAAAGTTGATAGGTATATTGTTATCTATTCATATATTGGTCAACCATAAACACCTATTTCAGGTGATGACAGCTGGTGCCAAACTGTAATGGTTTTCTGAACATTTTGTTATGTTACTCAAGAAAACTGAATCCAGTGATGCCATTTTGGTGCAGAACTGTAATAGTATGCAGCTTGA

Fln Alignment:

sp_v1.1_unigene5116___ALQAWKKAISDDPLGITKTWVG---HDVCNYTGVFCAPALDKSCDRVVAGIDLNHGMLKGLLVEELGMLTDIALFHLNTNRFSGVVPXXXXXXXXXXXXDVS-NNQLSGNFPTVVLELQSLVYLDLRFNFFTGSLPAELFNKKEMDAIFVNNNYF-EDKIPDNLGN-SPVSVVSFANNKLTGSIPSNVGNMAQRLNEVLFLNNALSGCLPEETGMLDQLNVLDVSFNDIGGQVPLSLGCLGNIEQLILARNEFCGSIPDVICSIRSLQNLTVSYN
C0PTA1______________ALLAFKKAITYDPSRSLSNWTAQNSHNICSWYGVRCRPH-----SRRVVQIELSSSGLEGILSSSLGSLSFLKTLDLSANNLTGGIPPEFGRLKALRTLDLTFNEMLGGSVPKSLLNCTHLKWIGLANINLTGTIPTEFGRLVELEHLDLSSNYYLSGSIPTSLGNCTSLSHLDLSNNSLSGHIPPTLGNCIS-LSHLHLSENSLSGHIPPTLGNCTSLSHLDLSGNSLSGHIPPTLGKCISLSYIYLSGNSLSGHMPRTLGNLTQISHINLSFN

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
1208		25		75	0.996473
1210		75		25	0.996473
1211	75	25			0.996473
1212	75		25		0.996473
1214		75	25		0.996473
1216		25	75		0.996473
1217	66	33			0.997452
1219	66			33	0.997452
1306		60	40		1.0
1307	60			40	1.0
1309		60	40		1.0
1310	55	11		22	0.999999
1311	55		44		1.0
1312	22			77	0.999999
1314		77	22		0.999999
1315	55			44	1.0
1316	55		22	22	0.999999
1317	77		22		0.999999
1318	22	22			0.999999
1319	55	22	22		0.999999
1320		77		22	0.999999
1323			22	77	0.999999
1325	77			22	0.999999
1326	55	22	22		0.999999
1329	22	77			0.999999
1330	11			88	0.923564
1332		88		11	0.923564
1333	11	88			0.923564
1334	11	88			0.923564
1377		10		90	0.90298
1380		10		90	0.90298
1381		90	10		0.90298
1385	90	10			0.90298
1386		10	90		0.90298
1388		90		10	0.90298
1389	90		10		0.90298
1390	90		10		0.90298
1392	90			10	0.90298
1393			10	90	0.90298
1394	90			10	0.90298
1398		10	90		0.90298
1399	90			10	0.90298
1400	90	10			0.90298
1454		10	90		0.90298
1739	75		25		0.996473
1746	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain