SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5115

Length: 869 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5115

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Leucine rich repeat receptor kinase, putative n=1 Tax=Ricinus communis RepID=B9RDB7_RICCO	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	38%
Blast2go	leucine rich repeat receptor	-	-	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	0.0	68%
Blast2go	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	0.0	68%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A947

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 22 aas,

Fln protein: S*PWLSLNVLMEMKAALDPKGEILYSWVKGGDPCSGTFDGVACNEQGKVANVSLQGKGLSGSIPSTVGKLKCLTGLYLHYNSLGGEIPRELSNLTELLDLYLNVNGLSGPIPKELGAMSSLQALQLCCNKLTGSIPMELGSLKKLNVLALQNNHLNGAIPASLGVLTSLTRLDLSFNSLFGPIPTTLTDLPHLAILDVRNNSLSGKTPQGFKRMQEGFRYGNNSKLCGEDFPGLAMCNGSSPLIRPEPFGSRAPNLTAKSPGDSSVPPLQKIPESADFSRSCQNCSKTF

Protein Length: 290

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTTCTGATGGAGATGAAAGCTGCATTGGACCCCAAGGGGGAGATACTCTACTCTTGGGTGAAGGGAGGAGATCCCTGCAGTGGGACTTTTGATGGAGTGGCCTGCAATGAGCAAGGAAAAGTGGCCAATGTTTCTCTGCAAGGCAAAGGATTATCAGGCTCAATACCCTCGACCGTTGGCAAGCTCAAGTGCCTTACTGGACTTTATTTGCATTACAACAGCCTTGGAGGGGAGATACCCAGAGAGCTTTCTAACTTAACTGAGCTGCTGGACCTTTATCTTAATGTCAATGGGCTCTCTGGTCCCATTCCCAAGGAGCTGGGAGCCATGTCCAGCTTGCAAGCACTCCAGCTGTGCTGCAACAAGTTGACAGGGTCTATACCTATGGAGTTGGGGTCTCTGAAGAAGCTCAATGTTCTTGCCCTGCAAAACAACCATTTAAACGGTGCAATACCAGCATCATTGGGAGTGCTAACCTCGCTGACAAGGCTGGACCTCAGCTTCAACTCACTTTTTGGGCCCATACCGACAACTCTTACAGACCTCCCTCATCTTGCTATTTTGGACGTCAGGAACAACAGTCTCTCCGGAAAGACTCCTCAAGGTTTTAAACGAATGCAAGAAGGATTCAGGTATGGAAACAATTCAAAGCTCTGTGGAGAAGACTTTCCTGGGCTTGCAATGTGTAATGGAAGTTCTCCATTAATAAGGCCAGAACCTTTCGGCTCACGGGCACCAAATCTAACTGCCAAATCTCCTGGGGACTCCTCTGTGCCTCCGTTGCAGAAAATTCCAGAGTCTGCAGATTTCTCAAGAAGTTGCCAAAATTGCTCCAAAACGTTT

Fln Alignment:

sp_v1.1_unigene5115___LSLNVLMEMKAALDPKGEILYSWVKGGD-PCSGTFDGVACNEQGKVANVSLQGKGLSGSIPSTVGKLKCLTGLYLHYNSLGGEIPRELSNLTELLDLYLNVNGLSGPIPKELGAMSSLQALQLCCNKLTGSIPMELGSLKKLNVLALQNNHLNGAIPASLGVLTSLTRLDLSFNSLFGPIPTTLTDLPHLAILDVRNNSLSGKTPQGFKRMQ
D5A947______________LLLSLLKNLKAPPN----IIRSWNSSDKYPCH--WEGVSCHRDHTVNVLDLTGQLISGTLSPAIGGLRKLRALYLSSNTLSATIPRELGNCTELEYLDLSENNLHGHIPLEVGRLTKLSYLSLYSNFLTGTIPPSIFGLPLLEEIYLNQNNLTGEIPSNVGNLTKLSSLWLAENKLSGTIPASITNCRRLAKLYLYHNQLHGNLPESLGRLQ

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
765	71	14			0.984337

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain