SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5107

Length: 2112 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene5107
ATGGGCGCCCTGTGCTTATCGTATTTTCAGTCTGCAGAGTTTCAGCAATGGCGGACCGCAAGCAGTCCTTGGCGAGGATTACGAGATAGCCTTTTCTATAGCCCGTAGGACCCCAGTTCAACGGCGCTCTGTCTCGAGCTTTGTGATACAGTACAGCAATTACACGTCAGATAAGGATTTCGCGCAAGTTAAGATCACAGGGTGTCTTGGAATTGCCCGCTTGAAAAAGGCAAAGCACAAAAGCAAGGGCAAGTGCTCGGAATCTTGCTTTTATCTTTCGTAACAACATGCATTATTTAGCTTCATACCCGGGGCTGATTATATAAACGGTGACTTAAACCGCAGGAGGGTTTATTCGTGGAATATTAGATTGAATGATCAAATGTTGAGTGCTTGCGTTCGTAGCTGCATTATTACAGGAGAGGCTCTTGGGCATAGTTTTAGAGTTCATAATGGACGGCTTGATATATCTTCTGAAATATGCAATTGAATAAGAGGCTCTGGAAGAAGAGAATTTAGGGCCTGGAAACAGGAAAGGAGAGTTGAATAAATGGGGGCCTGCTGCTGTCGTCTAAGAACAAATGTTCTCGTTAATTACAGCTCAGGCCTTTGTCAAGGACGTTACTGCATTCCTGGCTGTGCAAGTTGTACTCGTGGAGTGCTGTGTGCTTCTAGAGCAGAAGAGATAGATTCTTCTTCTGTGCAAGATGGGAGGCGTGTTCAGACAGCTTCTGCTGGACTAACGACAAGACAGAATAAGAGTGGTCCTGTTCAGAGTCGGGAGTCTCAACTTCTGAGAGTAAGTTCTGATGAAACTCAAGGTGAAGAAGCAGTTCCATTTCAAAATTTGAAAAGTGCAGAAAACGAGAGTGAATTATCAGATTGCAAACCAGATTCTCCAGAAAAATGCCAGCCATCAAAACTAAGTGATGCTGTTGTGCCATTGGTGGATGAAGAGGATGGTTGTCCCACTTGTCTTGAAGAATATGATGAAGAGAACCCCAAAATAATTACGAAATGTGATCATCATTTTCATCTTGCGTGTATCCTTGAGTGGATGGAGAGAAGTGACACATGTCCCATTTGCGATCAGGAAATGATATTCAATGAGACAACATAAGGTATCATTCAATGAGACATCTTCAGAGTCACTCTAGGACTGGGAAGTTTATTTCTTCTCCTAGTTATTAGATTTTGAGATCTGTCTGCAGTGAAGCAGCAATGAGGTGGAAGGGGATTGCCTCTTTCTTTTTTGTGTTACATGTAATAGCAATCCTATGTTGAATTACGTTCATATAATATTAGATACCTAGTTCAAGATGACCGTATTCGTCACTAAAATTGAGATGTTTTCTCCTTTATGAAACTTTGTTTCTTCTGTGGCCCCTTCTTTATCTTTTTATGGTCTGTAGTTTACTTCGAAGAAAGCTTGAGCCAAGTTAATAATGTGCAAAGCTATTCCAGATGGTCTCGAAGGACTCTTTCGAAACCAATGTGACATTCATGCAACTGGATCTAAGGGAGCAAATCCAAGAGAGGTAGAATCTGTTTGGGACCTATTATGACCTGGACACTGGTATAGCAAATTTTGAACTGCATGCGTATATTAGGAAATCTCACGAGACACAGCAAGGTCTGAATGGCCTATGAAGACAAGGACAGCAGGTTCACAATATTTTGAGCTGCACCCTTATTAGGAATCTCAGTGGAGCAGAATAAATATCAAGGTCTCAAAGTAGCCTTCCTGTAATTATTTTTGAGGACATAGTGTAGTAGCGAAGTTCTGATCTACAGCTTGCATGGGAAATATCAACTCACTGCATTATGATGCTTATCAAAGGTTGTGGGTTTGCTTTGTGGAGATTAATTAGAAGTATCTTCAAATATCCTGTCCTTTTAAATGTCGCCAATTAGATGTTTTGGTAGTGGATTGAATTATGCTCTTGCCATGTTTACTAATTTTCGAGCTATCTCATTCAGAGGTATATCCCCTCCGTAGAGCATGATGCAGAGCGAAGGTTGAGAGTTGCACAGTGGTGATTAAATAAAGCATCTTCAAATATCTTTCTCCTCTGAATGTGGCTAATTGAATGCTTATATGGATGATCCATG

Ace file of the UniGene sp_v1.1_unigene5107

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RDU7_RICCO	-	-	3.0e-27	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Blast2go	protein binding	-	-	5.43415e-27	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	5.43415e-27	61%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PTQ1

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 190 - 228

Fln protein: MGACCCRLRTNVLVNYSSGLCQGRYCIPGCASCTRGVLCASRAEEIDSSSVQDGRRVQTASAGLTTRQNKSGPVQSRESQLLRVSSDETQGEEAVPFQNLKSAENESELSDCKPDSPEKCQPSKLSDAVVPLVDEEDGCPTCLEEYDEENPKIITKCDHHFHLACILEWMERSDTCPICDQEMIFNETT*

Protein Length: 191

Fln nts: ATGGGCGCCCTGTGCTTATCGTATTTTCAGTCTGCAGAGTTTCAGCAATGGCGGACCGCAAGCAGTCCTTGGCGAGGATTACGAGATAGCCTTTTCTATAGCCCGTAGGACCCCAGTTCAACGGCGCTCTGTCTCGAGCTTTGTGATACAGTACAGCAATTACACGTCAGATAAGGATTTCGCGCAAGTTAAGATCACAGGGTGTCTTGGAATTGCCCGCTTGAAAAAGGCAAAGCACAAAAGCAAGGGCAAGTGCTCGGAATCTTGCTTTTATCTTTCGTAACAACATGCATTATTTAGCTTCATACCCGGGGCTGATTATATAAACGGTGACTTAAACCGCAGGAGGGTTTATTCGTGGAATATTAGATTGAATGATCAAATGTTGAGTGCTTGCGTTCGTAGCTGCATTATTACAGGAGAGGCTCTTGGGCATAGTTTTAGAGTTCATAATGGACGGCTTGATATATCTTCTGAAATATGCAATTGAATAAGAGGCTCTGGAAGAAGAGAATTTAGGGCCTGGAAACAGGAAAGGAGAGTTGAATAA_-_ATGGGGGCCTGCTGCTGTCGTCTAAGAACAAATGTTCTCGTTAATTACAGCTCAGGCCTTTGTCAAGGACGTTACTGCATTCCTGGCTGTGCAAGTTGTACTCGTGGAGTGCTGTGTGCTTCTAGAGCAGAAGAGATAGATTCTTCTTCTGTGCAAGATGGGAGGCGTGTTCAGACAGCTTCTGCTGGACTAACGACAAGACAGAATAAGAGTGGTCCTGTTCAGAGTCGGGAGTCTCAACTTCTGAGAGTAAGTTCTGATGAAACTCAAGGTGAAGAAGCAGTTCCATTTCAAAATTTGAAAAGTGCAGAAAACGAGAGTGAATTATCAGATTGCAAACCAGATTCTCCAGAAAAATGCCAGCCATCAAAACTAAGTGATGCTGTTGTGCCATTGGTGGATGAAGAGGATGGTTGTCCCACTTGTCTTGAAGAATATGATGAAGAGAACCCCAAAATAATTACGAAATGTGATCATCATTTTCATCTTGCGTGTATCCTTGAGTGGATGGAGAGAAGTGACACATGTCCCATTTGCGATCAGGAAATGATATTCAATGAGACAACATAAGGTATCATTCAATGAGACATCTTCAGAGTCACTCTAGGACTGGGAAGTTTATTTCTTCTCCTAGTTATTAGATTTTGAGATCTGTCTGCAGTGAAGCAGCAATGAGGTGGAAGGGGATTGCCTCTTTCTTTTTTGTGTTACATGTAATAGCAATCCTATGTTGAATTACGTTCATATAATATTAGATACCTAGTTCAAGATGACCGTATTCGTCACTAAAATTGAGATGTTTTCTCCTTTATGAAACTTTGTTTCTTCTGTGGCCCCTTCTTTATCTTTTTATGGTCTGTAGTTTACTTCGAAGAAAGCTTGAGCCAAGTTAATAATGTGCAAAGCTATTCCAGATGGTCTCGAAGGACTCTTTCGAAACCAATGTGACATTCATGCAACTGGATCTAAGGGAGCAAATCCAAGAGAGGTAGAATCTGTTTGGGACCTATTATGACCTGGACACTGGTATAGCAAATTTTGAACTGCATGCGTATATTAGGAAATCTCACGAGACACAGCAAGGTCTGAATGGCCTATGAAGACAAGGACAGCAGGTTCACAATATTTTGAGCTGCACCCTTATTAGGAATCTCAGTGGAGCAGAATAAATATCAAGGTCTCAAAGTAGCCTTCCTGTAATTATTTTTGAGGACATAGTGTAGTAGCGAAGTTCTGATCTACAGCTTGCATGGGAAATATCAACTCACTGCATTATGATGCTTATCAAAGGTTGTGGGTTTGCTTTGTGGAGATTAATTAGAAGTATCTTCAAATATCCTGTCCTTTTAAATGTCGCCAATTAGATGTTTTGGTAGTGGATTGAATTATGCTCTTGCCATGTTTACTAATTTTCGAGCTATCTCATTCAGAGGTATATCCCCTCCGTAGAGCATGATGCAGAGCGAAGGTTGAGAGTTGCACAGTGGTGATTAAATAAAGCATCTTCAAATATCTTTCTCCTCTGAATGTGGCTAATTGAATGCTTATATGGATGATCCATG

Fln Alignment:

sp_v1.1_unigene5107___DGRRVQTASAGLTTRQNKSGPVQSRESQLLRVSSDETQGEEAVPFQNLKSAENESELSDCKPDSPEKCQPSKLS---DAVVPLVDEEDGCPTCLEEYDEENPKIITKCDHHFHLACILEWMERSDTCPICDQEMIFNET
C0PTQ1______________DPRYVRLQRDGLVSRREKTSSYLHEESEPIRRDNNEGCVEALTTLQKRNGADGEEQIQGYHTEISEKCQSSKTMLTVESVIALVEDEDICPTCLDEYTVENPKISAQCGHHFHLGCIYEWMERSENCPVCNKEMVFSES

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
1391		85		14	0.993533
1697	90	10			0.90298
1698			10	90	0.90298
1700	90	10			0.90298
1702			90	10	0.90298
1703	90		10		0.90298
1705		10		90	0.90298
1706		70		30	1.0
1709		90		10	0.90298
1710	90		10		0.90298
1713		10		90	0.90298
1714			90	10	0.90298
1717			90	10	0.90298
1720		10	90		0.90298
1722	90			10	0.90298
1723	88	11			0.923564
1724	11			88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain