SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5096

Length: 2535 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene5096
TAGGCAGTGAGTGCAGCGAGTAGAGTAACATGGAGCGTTGCGGGAGAGAGAAAAAGTATGTTGCAAGTATTTGTTTGCTTCTGCAGATGGCGACAAGGAAATACCGGCGGTGAAGCGTTCAATACATTTTCTCTTCTCGATGTAGCTATTTATAATAATAATGGGAATATTCAATGGGGGGGGGCGTGGAATGTGCCAACGGTTGTGGCGATCTGAAGAGGTGGAGTTGGCAGGGCTTCTCGTGACAGTCACTTCCGATGACGACGACAGAGGGAGGTGAAGGAGAAGAAGGGGCGTCACATGGTCAGATACTAGTGTTTCGGGAGTCTATAATTATTGTGTGAGAAGAGCAAACCCCGCATGGGGATTGTGTTGTTTTGCATTTTGCCAGATTCTCTTATTCTTTTCTTGCTCTCTGCATTATATCTTGTCTAGAATCTGGTGCTCTGCTGATTCGTTGCCATTGATTTTTGATTGTAAGTGCCTTATTGAATTCGCCTGCCTGGGTCCTTTCATAGTGAAAAGGGGACCGCGTTCGAATTCCATGGCAGGGACTCTGCATATGGCTGGCTCGATTCCGGGGCTCTCTGTGAATTCTCAGGCTGATCATCGAGCCGGAGGAGGAGCAGCAGCTTCGATCACGATCGCGCCGTCTGCCATTTTTGGGGATAGAGTTTCGTTTTCTCTGAAGACGGAAATTCTCGGAGATAAATTTGCTGGGGACCGTAGGAAGGGATCGGAGAAAAAAGAAAGAACGGAGCAGTGGTCTCCTTGTTGACTGATGTTTCCAAAGAGATCCTGACTCTCCAGATGCCAAGGTTTGAAAAGACCCATGCGGATCCCAAAACAGTTTGTTCAATCATACTAGGTGGGGGGAGCTGGGACACGCCTTTTTCCTCTCACACGGAGAAGAGCAAAGCCAGCAGTACCAATTGGGGGATGTTACAGGCTAATTGATGTGCCAATGAGCAATTGCATTAACAGTGGTATCAACAAGATTTTTATCCTGACGCAGTTTAACTCTCAATCACTTAATCGCCACCTTGCCCAGACGTACAGTTTTGGGAATGGTGTAAACTTTGGGGATGGCTTTGTCGAGCCTCTAGCAGCTACTCAGACACCTGGTGAACATGGAAAGAAGTGGTTTCAAGGCACTGCAGACGCAGTGCGACAATTCACTTGGCTTTTTGAGGATTATGCAAAGAACAAACGTATAGAGCACTTCGTGATATTGTCTGGTGACCATCTCTATCGTATGGATTACATGGACTTTATACAGAAGCACATTGATACTGGGGCTGATATCACAATCTCCTGCGTACCAATGGATGACAGCCGTGCATCTGATTATGGATTGATGAAAATTGATGATAGAGGCCGAGTGCTCTATTTTAGTGAAAAGCCCAAGGGAGCAGATTTGAAAGCAATGGAAGTGGACACAACAATCCTTGGCCTGTCACCCCAAGAGGCTAAAAAGTCACCTTACATTGCTTCAATGGGAATTTATGTCTTCAGGACAGACATTCTTCTTAAACTTCTCAGGTGGAGATACCCAACTGCAAATGATTTTGGCTCGGAAATTATTCCTGCATCTACAAAGGAATACAATGTACAGGCATATCTTTTTAATGATTATTGGGAGGACATAGGAACAATCAAGTCCTTCTTTGATGCAAATTTAGCTCTTGCAGCTCAGCCTCCAAAGTTCTTATTTTATGATCCCATGAAGCCTATCTTTACTTCGCCTTGTTTTCTTCCACCAACGAAAATAGAAAGATGTCGGGTATTGGATTCAATAATTTCACATGGATGTTTTCTCAGAGAATGCAGTGTAGAGCATTCCGTTGTAGGAATTCGTTCACGATTGGAATATGGTGTTGAGTTGAAGGAAACAATGATGATGGGAGCTGACAATTATGAAACTGAAGCTGAAATTGCGTCCCTCTTAGCTGAAGGGAAAGTGCCTATTGGTGTTGGGGAGAATACAAAAATAAGGAATTGTATTATTGACAAAAATGCAAGAATTGGAAAGAATGTTGTGATTGTGAACACGGATAATGTGGAAGAAGCAGAGAGACCATCAGAAGGATATTACATCCGTTCAGGCATTACTGTAATATTGAAGAACTCCAGAATTAAAGATGGCACTGTAATATAAAGGAGTCCCCATTGTCCCGAGGCAAGCAAAAGCAACACGGAAGTATGGACTTTATATGGCATATAAACAGTACGTGCCCGAGGAAGAGAGTACACACGCTTTTGGCCTTTTAAAAGCAGAGTGGAAACCTGGAGGGACCATAAAGATGTATCCTAGCAGTAGCCGTCAAGAGTTGCACTTGGACGTGATGGATGGAGACAATAGTCGAACTGCACCACTGTTCCAAATTGAACAAGTTTCTCTGGCCAGGGACTGCTAATTATCTATTAATAAATATAAAGTCAGCAGTGTACTTGGAATGACTTGCTAGAAATGTACAGATGTATTATCCTTTAATTAATAATCTAAAGGGGACGTGGATTCTCTCTTGTACATAT

Ace file of the UniGene sp_v1.1_unigene5096 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glucose-1-phosphate adenylyltransferase n=3 Tax=Selaginella moellendorffii RepID=D8RB04_SELML	-	-	76%
FL-Next	sp=Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic; Beta vulgaris (Sugar beet).	-	-	70%
Blast2go	protein	-	-	88%

Source	InterPros	Term	Type	Identity
Blast2go	Nucleotidyl transferase	IPR005835	-	88%
Blast2go	ADP-glucose pyrophosphorylase, conserved site	IPR005836	-	88%
Blast2go	Trimeric LpxA-like	IPR011004	-	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P55233

Fln msg:

Fln protein: MAGTLHMAGSIPGLSVNSQADHRAGGGAAASITIAPSAIFGDRVSFSLKTEILGDKFAGDRRKGSEKKERTEQWSPC*LMFPKRS*LSRCQGLKRPMRIPKQFVQSY*VGGAGTRLFPLTRRRAKPAVPIGGCYRLIDVPMSNCINSGINKIFILTQFNSQSLNRHLAQTYSFGNGVNFGDGFVEPLAATQTPGEHGKKWFQGTADAVRQFTWLFEDYAKNKRIEHFVILSGDHLYRMDYMDFIQKHIDTGADITISCVPMDDSRASDYGLMKIDDRGRVLYFSEKPKGADLKAMEVDTTILGLSPQEAKKSPYIASMGIYVFRTDILLKLLRWRYPTANDFGSEIIPASTKEYNVQAYLFNDYWEDIGTIKSFFDANLALAAQPPKFLFYDPMKPIFTSPCFLPPTKIERCRVLDSIISHGCFLRECSVEHSVVGIRSRLEYGVELKETMMMGADNYETEAEIASLLAEGKVPIGVGENTKIRNCIIDKNARIGKNVVIVNTDNVEEAERPSEGYYIRSGITVILKNSRIKDGTVI*

Protein Length: 539

Fln nts: TAGGCAGTGAGTGCAGCGAGTAGAGTAACATGGAGCGTTGCGGGAGAGAGAAAAAGTATGTTGCAAGTATTTGTTTGCTTCTGCAGATGGCGACAAGGAAATACCGGCGGTGAAGCGTTCAATACATTTTCTCTTCTCGATGTAGCTATTTATAATAATAATGGGAATATTCAATGGGGGGGGGCGTGGAATGTGCCAACGGTTGTGGCGATCTGAAGAGGTGGAGTTGGCAGGGCTTCTCGTGACAGTCACTTCCGATGACGACGACAGAGGGAGGTGAAGGAGAAGAAGGGGCGTCACATGGTCAGATACTAGTGTTTCGGGAGTCTATAATTATTGTGTGAGAAGAGCAAACCCCGCATGGGGATTGTGTTGTTTTGCATTTTGCCAGATTCTCTTATTCTTTTCTTGCTCTCTGCATTATATCTTGTCTAGAATCTGGTGCTCTGCTGATTCGTTGCCATTGATTTTTGATTGTAAGTGCCTTATTGAATTCGCCTGCCTGGGTCCTTTCATAGTGAAAAGGGGACCGCGTTCGAATTCC_-_ATGGCAGGGACTCTGCATATGGCTGGCTCGATTCCGGGGCTCTCTGTGAATTCTCAGGCTGATCATCGAGCCGGAGGAGGAGCAGCAGCTTCGATCACGATCGCGCCGTCTGCCATTTTTGGGGATAGAGTTTCGTTTTCTCTGAAGACGGAAATTCTCGGAGATAAATTTGCTGGGGACCGTAGGAAGGGATCGGAGAAAAAAGAAAGAACGGAGCAGTGGTCTCCTTGTTGACTGATGTTTCCAAAGAGATCCTGACTCTCCAGATGCCAAGGTTTGAAAAGACCCATGCGGATCCCAAAACAGTTTGTTCAATCATACTAGGTGGGGGGAGCTGGGACACGCCTTTTTCCTCTCACACGGAGAAGAGCAAAGCCAGCAGTACCAATTGGGGGATGTTACAGGCTAATTGATGTGCCAATGAGCAATTGCATTAACAGTGGTATCAACAAGATTTTTATCCTGACGCAGTTTAACTCTCAATCACTTAATCGCCACCTTGCCCAGACGTACAGTTTTGGGAATGGTGTAAACTTTGGGGATGGCTTTGTCGAGCCTCTAGCAGCTACTCAGACACCTGGTGAACATGGAAAGAAGTGGTTTCAAGGCACTGCAGACGCAGTGCGACAATTCACTTGGCTTTTTGAGGATTATGCAAAGAACAAACGTATAGAGCACTTCGTGATATTGTCTGGTGACCATCTCTATCGTATGGATTACATGGACTTTATACAGAAGCACATTGATACTGGGGCTGATATCACAATCTCCTGCGTACCAATGGATGACAGCCGTGCATCTGATTATGGATTGATGAAAATTGATGATAGAGGCCGAGTGCTCTATTTTAGTGAAAAGCCCAAGGGAGCAGATTTGAAAGCAATGGAAGTGGACACAACAATCCTTGGCCTGTCACCCCAAGAGGCTAAAAAGTCACCTTACATTGCTTCAATGGGAATTTATGTCTTCAGGACAGACATTCTTCTTAAACTTCTCAGGTGGAGATACCCAACTGCAAATGATTTTGGCTCGGAAATTATTCCTGCATCTACAAAGGAATACAATGTACAGGCATATCTTTTTAATGATTATTGGGAGGACATAGGAACAATCAAGTCCTTCTTTGATGCAAATTTAGCTCTTGCAGCTCAGCCTCCAAAGTTCTTATTTTATGATCCCATGAAGCCTATCTTTACTTCGCCTTGTTTTCTTCCACCAACGAAAATAGAAAGATGTCGGGTATTGGATTCAATAATTTCACATGGATGTTTTCTCAGAGAATGCAGTGTAGAGCATTCCGTTGTAGGAATTCGTTCACGATTGGAATATGGTGTTGAGTTGAAGGAAACAATGATGATGGGAGCTGACAATTATGAAACTGAAGCTGAAATTGCGTCCCTCTTAGCTGAAGGGAAAGTGCCTATTGGTGTTGGGGAGAATACAAAAATAAGGAATTGTATTATTGACAAAAATGCAAGAATTGGAAAGAATGTTGTGATTGTGAACACGGATAATGTGGAAGAAGCAGAGAGACCATCAGAAGGATATTACATCCGTTCAGGCATTACTGTAATATTGAAGAACTCCAGAATTAAAGATGGCACTGTAATATAA___AGGAGTCCCCATTGTCCCGAGGCAAGCAAAAGCAACACGGAAGTATGGACTTTATATGGCATATAAACAGTACGTGCCCGAGGAAGAGAGTACACACGCTTTTGGCCTTTTAAAAGCAGAGTGGAAACCTGGAGGGACCATAAAGATGTATCCTAGCAGTAGCCGTCAAGAGTTGCACTTGGACGTGATGGATGGAGACAATAGTCGAACTGCACCACTGTTCCAAATTGAACAAGTTTCTCTGGCCAGGGACTGCTAATTATCTATTAATAAATATAAAGTCAGCAGTGTACTTGGAATGACTTGCTAGAAATGTACAGATGTATTATCCTTTAATTAATAATCTAAAGGGGACGTGGATTCTCTCTTGTACATAT

Fln Alignment:

sp_v1.1_unigene5096___GDRVSFSLKTEILGDKFAGDRRKGSEKKERTEQWSPC*LMFP---KRS*LSRCQGLKRPMRIPKQFVQSY*VGGAGTRLFPLTRRRAKPAVPIGGCYRLIDVPMSNCINSGINKIFILTQFNSQSLNRHLAQTYSXXXXXXXXXXXVEPLAATQTPGEHGKKWFQGTADAVRQFTWLFEDYAKNKRIEHFVILSGDHLYRMDYMDFIQKHIDTGADITISCVPMDDSRASDYGLMKIDDRGRVLYFSEKPKGADLKAMEVDTTILGLSPQEAKKSPYIASMGIYVFRTDILLKLLRWRYPTANDFGSEIIPASTKEYNVQAYLFNDYWEDIGTIKSFFDANLALAAQPPKFLFYDPMKPIFTSPCFLPPTKIERCRVLDSIISHGCFLRECSVEHSVVGIRSRLEYGVELKETMMMGADNYETEAEIASLLAEGKVPIGVGENTKIRNCIIDKNARIGKNVVIVNTDNVEEAERPSEGYYIRSGITVILKNSRIKDGTVI
P55233______________GERISQSLKGKDLRALFSRTESKGRNVNKPGVAFSVLTSDFNQSVKESLKYEPALFESPKADPKNVAAIVLGGGAGTRLFPLTSRRAKPAVPIGGCYRLIDVPMSNCINSGIRKIFILTQFNSFSLNRHLARTYNFGDGVNFGDGFVEVFAATQTPGESGKKWFQGTADAVRQFFWAFED-SKSKDVEHIVILSGDHLYRMDYMSFWQKHIDTNADITVSCIPMDDSRASDYGLMKIDHTGRIVHFAEKPKGSDLTAMQVDTTVLGLSDLEAMSNPYIASMGVYVFRTDVLMELLNRKYPSSNDFGSEIIPSAVGESNVQAYLFNDYWEDIGTIKSFFDSNLALTQQPPKFEFYDPKTPFYTSARFLPPTKVDRCKIVDSIVSHGCFLQESSIQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAEGKVPVGVGQNTKIKNCIIDKNAKIGKDVVIANTDGVEEADRPNEGFYIRSGITIILKNATIQDGLVI

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
428		12		87	0.992554
429	85	14			0.993533
891	10			90	0.90298
893			10	90	0.90298
898			10	90	0.90298
899	10	90			0.90298
901		90	10		0.90298
932		11		88	0.923564
1122	87	12			0.992554
1477	88		11		0.923564
1621		28		71	1.0
1624			71	28	1.0
1625		71		28	1.0
1628		28		71	1.0
1634	16		83		0.994512
1635		16		83	0.994512
1642	16		83		0.994512
1649	16		83		0.994512
1679	80		20		0.995493
2227	66	33			0.997452
2228		33	66		0.997452
2229		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain