SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5083

Length: 1417 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5083

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ubiquitin family protein; K01090 protein phosphatase [EC:3.1.3.16]	-	-	72%
FL-Next	sp=Ubiquitin-like domain-containing CTD phosphatase; Arabidopsis thaliana (Mouse-ear cress).	-	-	75%
Blast2go	protein	-	-	84%

Source	ECs	Term	Type	e value	Identity
AutoFact	Phosphoprotein phosphatase.	EC:3.1.3.16	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: Q8W3M6

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: SVAAAPSSSPSVAAAGEEEITVAVKWSGREYTVRACGDDTVGELKRRISEVTNVLPKRQKLLYPKTAPPKLANDATLLSDLSLKPSLKMTMIGTVEDEIIVDPIDAPEIIDDFELGQDDVSEIKDKEVNKQKLRRRIEQYKIKQLNPCREGKKLLVLDIDYTLFDHRSTAENPVELMRPYLHEFLAAAYAEYDIIIWSATSMKWVEVKMEQLGVLNNPNYKITALLDHLAMITVKSDSHGVFDCKPLGLIWGLFPKYYNPNNTIMFDDLRRNFVMNPQNGLVIRPFRKAHLNRSTDQELVGLTQYLLAIAELDDLSHLDHKKWESYTEQVLRQRRA*

Protein Length: 338

Fln nts: ATGGGGATCCTGCGCCTTGTTAGTAAATCCCTTCTCTGCACAGGCTCACTGGTGTGATGTCACTCAATACCCGAACGCTAATATTAAAAAACTGATAATTTCTCCATAGTCAGTTGCTGCGGCACCATCTTCATCTCCTTCGGTGGCGGCAGCAGGAGAAGAAGAGATAACCGTGGCGGTGAAATGGAGCGGCAGAGAATACACGGTGCGCGCGTGCGGAGACGATACAGTGGGGGAATTGAAGAGACGAATAAGCGAGGTGACGAACGTGCTGCCAAAGCGGCAGAAGCTTCTCTATCCAAAGACTGCACCCCCCAAATTAGCAAATGACGCCACTCTGCTCTCCGACCTATCCCTCAAACCATCCCTCAAGATGACTATGATCGGTACTGTGGAAGATGAGATCATTGTGGATCCAATCGATGCCCCGGAGATAATTGATGACTTTGAGTTGGGACAAGATGATGTCAGCGAAATAAAGGACAAGGAAGTAAACAAGCAGAAATTAAGACGCCGCATAGAGCAATACAAGATCAAACAACTCAATCCATGTCGTGAAGGCAAGAAATTACTTGTGTTGGACATTGACTACACATTATTTGACCATCGATCTACAGCTGAAAACCCTGTGGAGCTTATGCGTCCATATCTCCATGAATTTTTGGCAGCTGCTTATGCGGAATATGATATAATCATATGGTCTGCAACGAGCATGAAGTGGGTTGAGGTGAAGATGGAGCAGCTTGGAGTTCTCAATAATCCGAATTACAAAATTACGGCACTCCTTGATCATCTAGCAATGATCACTGTGAAATCTGATTCGCATGGTGTCTTTGATTGCAAGCCTCTTGGGCTAATATGGGGCTTGTTTCCCAAGTACTACAATCCCAATAATACAATCATGTTCGATGACCTTAGAAGGAACTTTGTCATGAATCCACAGAATGGGCTGGTGATAAGACCTTTTCGTAAAGCTCATTTGAATCGCAGCACCGATCAAGAGCTTGTAGGGCTTACACAGTATTTGCTTGCAATAGCAGAACTGGATGATCTTAGCCATCTTGATCACAAGAAGTGGGAGTCATACACCGAGCAAGTGCTAAGACAAAGGCGTGCATAA___CCAATCTGCTAATTCGAACCACAAAAACTAAGGAACTGCTTTTGGTTAATTAAATTTTATTAATACAGATATGAAGACATACATTGAAAGATGATTTTGTTTAGACTTTTGGACACTAGTCAGAATCTAATTGCCACTGTATGCTGAATCTGAGTTCGTGATATCATTGTATCTCAAGGGATTTCAAGTGATATGATTGCAAGTTGACTAAGTTTATTAAATATTCATTGTAGCTACAAGCGTTATACAAAGGGAATGCTTAGTTCAAGAGAGAAAAGATCAATAACACAAATCTTT

Fln Alignment:

sp_v1.1_unigene5083___EEEITVAVKWSGREYTVRACGDDTVGELKRRISEVTNVLPKRQKLLYPKTAPPKLANDATXXXXXXXXXXXXMTMIGTVEDEIIVDPIDAPEIIDDFELGQDDVSEIKDKEVNKQKLRRRIEQYKIKQLNPCREGKKLLVLDIDYTLFDHRSTAENPVELMRPYLHEFLAAAYAEYDIIIWSATSMKWVEVKMEQLGVLNNPNYKITALLDHLAMITVKSDSHGVFDCKPLGLIWGLFPKYYNPNNTIMFDDLRRNFVMNPQNGLVIRPFRKAHLNRSTDQELVGLTQYLLAIAELDDLSHLDHKKWESYTEQVLRQRR
Q8W3M6______________EEELTLTVKWNGKEYTVRICADDSVAELKRRICLLTTVLPKRQKLLYPKIGN-KLSDDSLLLSSISFKPSLKMTMIGTVEDDIIVDQAESPEIVDDFELGKEEAVDVKDKEVNKQKLRRRIDQYKINLRTPCRQGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMTELGVLNNPNYKVTALLDHLAMITVQSDTRGIFDCKPLGLIWALLPEFYNPGNTIMFDDLRRNFVMNPQNGLTIKPFRKAHANRDTDQELVKLTQYLLTIAELSDLSSLHHSRWESFSQDNVKRRR

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
364	90		10		0.90298
462	88		11		0.923564
479	90		10		0.90298
670		20		80	0.995493
696		16		83	0.994512
771	85		14		0.993533
1042	85	14			1.0
1287	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain