SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5079

Length: 1648 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5079

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transcription factor MYB251 n=1 Tax=Fagus crenata RepID=B5UAQ2_FAGCR	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	mybpa1 protein	-	-	70%

Source	InterPros	Term	Type	Identity
Blast2go	SANT/Myb domain	IPR001005	-	70%
Blast2go	Homeodomain-like	IPR009057	-	70%
Blast2go	Homeodomain-related	IPR012287	-	70%
Blast2go	Myb, DNA-binding	IPR014778	-	70%
Blast2go	Myb transcription factor	IPR015495	-	70%
Blast2go	Myb domain, DNA-binding	IPR017930	-	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLG1

Fln msg:

Fln protein: MVRTPCCLKREELNRGAWTAEEDTRLTQFVQTHGECGWRSLPKKAGLNRCGKSCRLRWLNYLRPDIKRGNISPDEEELIIRMHRLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLTMSSQNPKFPMPAPADPEQTASSESSEKDVVRSADYRVIHHSGMRLAPAKIGGTSISAGVPAPVSSDEVINMKSWKQLLEDSLMSDFDDSEDDTSLMGIELSDDVLGSEAPLTEIQTNVSCSTSGPNEPVHSHGHLLADATSNQRSSESNVLYSQDRNVLSLPPTDNTLDFRIQDFSLETLLLPSVYNFDEICPVQSQINSSDHVSCFAVAAEQAMTDIYNNTLEPDWLTPVEYGKQSTQSDQMNLLGNFFLSEENWEEEVPTSLSKIQEEEYRDILVDISNK*

Protein Length: 402

Fln nts: ATTGGGGTATGTTTTGTTCATGGTTAGGGTTTCTCTGGCCATGGATGATGAGGATACTGAGGCCGAGTATGTATGGAAGCAAACAGTGGCCAGGCCCTGTTTTCCACCTTGTGCATGTTACATATAATCCCTTTTTGTTTTCGTTGGGGGAGTCGAAGAAGATGGATGAAAAGCGAGAAGTATCAGAAGCCAGCTCGTGGTTTGGAGCAGCCTCGATACAAAAATTTGGACGTCGACGCATGTGAAGGTAAGCCTGCATC_-_ATGGTGAGAACTCCTTGCTGCTTAAAGCGAGAAGAGCTTAATCGAGGGGCCTGGACTGCAGAGGAGGATACCAGACTTACCCAGTTTGTCCAGACTCATGGAGAATGTGGATGGAGGTCTCTTCCTAAGAAAGCAGGTCTGAATCGTTGTGGGAAAAGCTGCAGATTGCGCTGGCTAAATTATCTTCGCCCTGACATTAAGCGGGGCAACATTTCTCCTGATGAGGAAGAACTCATAATCAGAATGCATCGCCTCCTTGGCAATCGATGGTCACTTATTGCTGGAAGGTTGCCTGGGAGAACAGACAATGAAATAAAGAACTACTGGAATACTCATTTGAGCAAGAAGCTTACAATGAGTAGCCAAAATCCTAAATTTCCAATGCCGGCACCTGCTGATCCAGAGCAGACTGCATCATCTGAGTCCAGTGAAAAAGATGTAGTGAGGTCAGCTGATTACAGAGTGATTCATCACTCTGGAATGAGATTAGCTCCTGCTAAAATCGGGGGTACTAGTATTTCAGCAGGAGTGCCTGCACCGGTTTCCTCTGACGAAGTCATCAACATGAAATCATGGAAGCAACTTCTAGAAGACTCGTTGATGAGCGATTTTGATGACTCAGAGGATGATACTTCGTTAATGGGGATTGAGCTGAGCGACGATGTTCTCGGATCAGAAGCCCCATTAACGGAGATTCAGACTAATGTCTCGTGTTCGACCTCCGGACCTAATGAACCAGTACACTCTCATGGGCATTTGCTAGCCGATGCCACTTCTAATCAGAGGTCATCTGAATCAAATGTTTTGTATTCTCAGGATCGCAATGTTCTGTCATTGCCTCCAACTGACAATACTCTGGATTTTAGGATCCAGGATTTCTCGTTAGAAACTCTTCTCCTGCCTTCTGTTTATAATTTCGATGAAATCTGTCCAGTTCAGAGCCAGATTAATAGCAGTGATCACGTCAGCTGCTTTGCAGTGGCTGCTGAACAGGCGATGACAGACATCTACAACAATACCTTGGAGCCAGATTGGCTGACACCTGTAGAATACGGAAAACAGTCGACCCAGTCCGATCAGATGAATTTGCTGGGAAATTTTTTTCTTTCAGAAGAAAACTGGGAGGAAGAAGTACCGACTAGCTTGAGCAAAATCCAAGAGGAAGAATACAGAGACATTCTTGTAGATATATCTAATAAGTAG___ATAGTAATTATAACCTCAGCTTGGTGTTTTAGCAGTTCATAGTTTGTAAAGATTGTAATGTATTGTATTAAGTTTATGATTGTTATCATAACGCTTCAGTTCAAACCCAATAATCCTGAAGCGTCTCAGAGCATATTAATTGCCTTGATTAATGGCCAAACTTTTTAGCATGTACATTGGAATGA

Fln Alignment:

sp_v1.1_unigene5079___MVRTPCCLKREELNRGAWTAEEDTRLTQFVQTHGECGWRSLPKKAGLNRCGKSCRLRWLNYLRPDIKRGNISPDEEELIIRMHRLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLTMSSQNPKFPMPAPADPEQTASSESSEKDVVRSADYRVIHHSGMRLAPAKIGGTSISAGVPAPVSSDEVINMKSWKQLLEDSLMSDFDDSEDDTSLMGIELSDDVLGSEAPLTEIQTNVSCSTSGPNEPVHSHGHLLADATSNQRSSESNVLYSQDRNVLSLPPTDNTLDFRIQDFSLETLLLPSVYNFDEICPVQSQINSSDHVSCFAVAAEQAMTDIYNNTLEPDWLTPVEYGKQSTQSDQMNLLGNFFLSEENWEEEVPTSLSKIQEEEYRDILVDISN
B8LLG1______________MGRTPCCSKREELNRGAWTAEEDTRLSEYIQSHGESGWRSLPKKAGLNRCGKSCRLRWLNYLRPDIKRGNISPDEEELIIRMHRLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLTMSSQNPKFPMQAPADPEQSASSDSSEDDVVRSAEYGVINHSGIRSPPAKIGGTSISARVPPPVASDEVVIMKSWKQLLEDSLMNELDDSEDNSSLMGIELSNDMLESEAPLMEIQNNVSCSASDPNESVYSHGHLVADETSNQRTSESNVLYSQDCNVLSLPPTDHTLDFRIQDFSLESLLQPSVYNLEEICPVQSQINGSDHVSCFALAAEQAMTDIYNNTLEPDWLTPVDYENQSSQPDQMDVLGNFFLSDENWQEEVPTSLSKIQEEEYRDILVDISN

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
284		33		66	1.0
347	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain