SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5077

Length: 2530 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene5077
CAGAAGTGTGGTGGGTTTGCTCTGTTGAATCTCCCTGCCCTGATTTTGAACTTCACCTGCGTTTTTAGGGTGGGTTTGGATTTTTATTTCGATTTCGATTTGGGATTTCGTTCTTCTTTTTCTCAATTATTTGGAGTAGTTGAAGGAGGCCGTGCTTTCTGTTTTTCCAATATCAGAAAGCAGAGAAAAGTTCAGTAAAAGAGAAAAAAACAAAGTTGAGAGAGAATGGCACAGATACAAGTCCAGCCCCAAAACCCTGGTGTTTCACAGCAGCAGCAGGTTGTTGGGAATGGCAGCAACAATCTGCCCAATCCATTCGTAACGGCGTCTCTGTATGTGGGCGATCTGGAGCCCAGTGTTACCGACGGCCAGATTTATGAGTTATTCCAGCAGATTGGTCCCGTTCTCTCTGTTCGCATCTGCAGAGATGTAAGCACCAAGAGTTCTCTTGGATACGCTTATGTCAATTACGGCAATAATGAAAATGCTAGCAGGGCTTTAGATCAGTTGAATTTTACACCTCTTAATGGAAAGCCTATTCGGGTAATGTATTCACATCGTGACCCCAGCATCCGCAAGAGTGGATCAGCAAACATATTTATTAAGAATCTTGACAAAGCAATAGACAATAAAGCTCTCTATGATACTTTCTCTATGTTTGGACCTATTCTCTCTTGTAAGGTCGCAATAGATGGATCGGGACAATCTAAAGGATATGGATTTGTGCAATTTGAGCAAGATGAAGCAGCACAAAATGCAATAGAAAAATTGAATGGTATGTTGATAAATGACAAACAGGTTTATGTTGGACCATTCATGAGAAAGCAGGAGCGAGAGCAAGCAAATGGAAAAGCCAAGTTTAATAATGTTTTTGTTAAGAATTTATCGGAGTCTGTAAATGAGGAGGATTTGAGGATTTGTTTTGGTGAGTATGGAAAAATTACTAGTGTTGTAGTGATGAGGGATGCAGAGGGAAAGTCAAAGTGTTTTGGATTTGTCAATTTTGAGAATGCAGATGATGCGGCAAATTGTGTTGAAAGCTTAAATGGCAAGAAAATTGATGGCAAGGAATGGTATGTTGGAAAAGCACAGAAGAAGTCTGAGAGGGAGTCTGAATTGAGGGGGCGATTTGAAAAGCTGTTGAAGGAGAGGCTTGAAAAGTTCCAAGGAGCAAATCTTTACTTAAAAAATTTGGATGATAGCATTGATGATGAAAGGTTAAGAGAACTGTTCTCTGCTTATGGTACAATCACTTCCTGCAAGGTAATGAGGGATTTTCATGGACACAGTAAAGGTTCAGGATTTGTTGCCTTCTCATCTCCTGATGAAGCATCCCGAGCTCTCGCAGAAATGAATGGGAAACTTGTTATCAGCAAGCCTCTTTATGTTGCTCTGGCTCAGCGCAAAGAGGAGAGAAGGGCAAGACTACAGGCTCAGTTCTCCCAATTGCGGAATCCAGTTGGAATAACTCCAGCCGTTCCTGCCCGTGTTCCTATTTACCCTCCCGGAGGTCCTGGACTAAACCAACAGATATTTTATGGCCAAGGACCACCTGCACTTATCCCTCCTCAAGCTGCTGGATTTGGTTATCAGCAACAACTAATCCCAGGTATAAGGCCAGGAGGTGGACCTATGCCCAATCTCTATTTTCCTCTCATGCAGCCTCAACAGGGTCAGCGTCCAGGTGGCAGGAGAGGTGGTTTAGCACCCATACAACAGCAACCACAGCAGCAGCTACCACTTATACAGCAGCAGATGCTACCTCGTGGTAATCGCCTATATCGTTACCCACCTGGAAGGAATGTTAATGAAATTCCCTTATCTGGAGTTGCGGGAGGGATACATCCTTTACCATCATTAGATATGGGCAACCTTTCTTTACGTGCAGCAGCTGAGACAACAATTTCACAGCCTATACCTATTGGAGCTTTGGCTTCAGCTCTTCCAAATGCAAGTCCGGAACAACAACGAACGATGCTTGGAGAAAGCTTGTATCCTTTGGTGGATCAGTTGGAACATGATCATGCAGCCAAAGTTACTGGTATGCTTTTGGAAATGGACCAAACTGAGGTTCTTCATTTGTTGGAGTCTCCTGAAGCCTTGAAGGCTAAAGTTGCAGAAGCGATGGAGGTTCTACGGAATGTGGCACAAGCTCCACAAACTCCCGCTGATCAGCTTGCAGCGTTATCTTTGAATGAGACTCTTGTGTCGTAATGTCATGTTGGTTGTACCATATTTATTTTTGGATTGGACTCGTATTGACATACTCGTTAGTTACATTACTAGTTAGATTACTATTTAGAACGGATAAGAATAGTTCAGAGCGTTAAGAGCTTGTTTTGGCTTGTCTTAGATTTTAAGGTAAAACAGTGTTATGAAAATTATATTTCCGTACTCAGGGAAAGTACCTATCTGTTGGTTATGACTATACTTTTGAAAAGTTTTGACTTGGGATTCAAGGTGCTTTTTTTTAATTGCCTTATGTTTTATTTGCTTTTACTAGATGTAACTAATATATTATTATGACATC

Ace file of the UniGene sp_v1.1_unigene5077

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	polyadenylate-binding protein, putative	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	protein	-	-	81%

Source	InterPros	Term	Type	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	81%
Blast2go	Polyadenylate-binding protein/Hyperplastic disc protein	IPR002004	-	81%
Blast2go	RNA recognition motif domain, eukaryote	IPR003954	-	81%
Blast2go	Polyadenylate binding protein, human types 1, 2, 3, 4	IPR006515	-	81%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9S1

Fln msg: your sequence is longer than subject: 663 - 313

Fln protein: MAQIQVQPQNPGVSQQQQVVGNGSNNLPNPFVTASLYVGDLEPSVTDGQIYELFQQIGPVLSVRICRDVSTKSSLGYAYVNYGNNENASRALDQLNFTPLNGKPIRVMYSHRDPSIRKSGSANIFIKNLDKAIDNKALYDTFSMFGPILSCKVAIDGSGQSKGYGFVQFEQDEAAQNAIEKLNGMLINDKQVYVGPFMRKQEREQANGKAKFNNVFVKNLSESVNEEDLRICFGEYGKITSVVVMRDAEGKSKCFGFVNFENADDAANCVESLNGKKIDGKEWYVGKAQKKSERESELRGRFEKLLKERLEKFQGANLYLKNLDDSIDDERLRELFSAYGTITSCKVMRDFHGHSKGSGFVAFSSPDEASRALAEMNGKLVISKPLYVALAQRKEERRARLQAQFSQLRNPVGITPAVPARVPIYPPGGPGLNQQIFYGQGPPALIPPQAAGFGYQQQLIPGIRPGGGPMPNLYFPLMQPQQGQRPGGRRGGLAPIQQQPQQQLPLIQQQMLPRGNRLYRYPPGRNVNEIPLSGVAGGIHPLPSLDMGNLSLRAAAETTISQPIPIGALASALPNASPEQQRTMLGESLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQAPQTPADQLAALSLNETLVS*

Protein Length: 664

Fln nts: CAGAAGTGTGGTGGGTTTGCTCTGTTGAATCTCCCTGCCCTGATTTTGAACTTCACCTGCGTTTTTAGGGTGGGTTTGGATTTTTATTTCGATTTCGATTTGGGATTTCGTTCTTCTTTTTCTCAATTATTTGGAGTAGTTGAAGGAGGCCGTGCTTTCTGTTTTTCCAATATCAGAAAGCAGAGAAAAGTTCAGTAAAAGAGAAAAAAACAAAGTTGAGAGAGA_-_ATGGCACAGATACAAGTCCAGCCCCAAAACCCTGGTGTTTCACAGCAGCAGCAGGTTGTTGGGAATGGCAGCAACAATCTGCCCAATCCATTCGTAACGGCGTCTCTGTATGTGGGCGATCTGGAGCCCAGTGTTACCGACGGCCAGATTTATGAGTTATTCCAGCAGATTGGTCCCGTTCTCTCTGTTCGCATCTGCAGAGATGTAAGCACCAAGAGTTCTCTTGGATACGCTTATGTCAATTACGGCAATAATGAAAATGCTAGCAGGGCTTTAGATCAGTTGAATTTTACACCTCTTAATGGAAAGCCTATTCGGGTAATGTATTCACATCGTGACCCCAGCATCCGCAAGAGTGGATCAGCAAACATATTTATTAAGAATCTTGACAAAGCAATAGACAATAAAGCTCTCTATGATACTTTCTCTATGTTTGGACCTATTCTCTCTTGTAAGGTCGCAATAGATGGATCGGGACAATCTAAAGGATATGGATTTGTGCAATTTGAGCAAGATGAAGCAGCACAAAATGCAATAGAAAAATTGAATGGTATGTTGATAAATGACAAACAGGTTTATGTTGGACCATTCATGAGAAAGCAGGAGCGAGAGCAAGCAAATGGAAAAGCCAAGTTTAATAATGTTTTTGTTAAGAATTTATCGGAGTCTGTAAATGAGGAGGATTTGAGGATTTGTTTTGGTGAGTATGGAAAAATTACTAGTGTTGTAGTGATGAGGGATGCAGAGGGAAAGTCAAAGTGTTTTGGATTTGTCAATTTTGAGAATGCAGATGATGCGGCAAATTGTGTTGAAAGCTTAAATGGCAAGAAAATTGATGGCAAGGAATGGTATGTTGGAAAAGCACAGAAGAAGTCTGAGAGGGAGTCTGAATTGAGGGGGCGATTTGAAAAGCTGTTGAAGGAGAGGCTTGAAAAGTTCCAAGGAGCAAATCTTTACTTAAAAAATTTGGATGATAGCATTGATGATGAAAGGTTAAGAGAACTGTTCTCTGCTTATGGTACAATCACTTCCTGCAAGGTAATGAGGGATTTTCATGGACACAGTAAAGGTTCAGGATTTGTTGCCTTCTCATCTCCTGATGAAGCATCCCGAGCTCTCGCAGAAATGAATGGGAAACTTGTTATCAGCAAGCCTCTTTATGTTGCTCTGGCTCAGCGCAAAGAGGAGAGAAGGGCAAGACTACAGGCTCAGTTCTCCCAATTGCGGAATCCAGTTGGAATAACTCCAGCCGTTCCTGCCCGTGTTCCTATTTACCCTCCCGGAGGTCCTGGACTAAACCAACAGATATTTTATGGCCAAGGACCACCTGCACTTATCCCTCCTCAAGCTGCTGGATTTGGTTATCAGCAACAACTAATCCCAGGTATAAGGCCAGGAGGTGGACCTATGCCCAATCTCTATTTTCCTCTCATGCAGCCTCAACAGGGTCAGCGTCCAGGTGGCAGGAGAGGTGGTTTAGCACCCATACAACAGCAACCACAGCAGCAGCTACCACTTATACAGCAGCAGATGCTACCTCGTGGTAATCGCCTATATCGTTACCCACCTGGAAGGAATGTTAATGAAATTCCCTTATCTGGAGTTGCGGGAGGGATACATCCTTTACCATCATTAGATATGGGCAACCTTTCTTTACGTGCAGCAGCTGAGACAACAATTTCACAGCCTATACCTATTGGAGCTTTGGCTTCAGCTCTTCCAAATGCAAGTCCGGAACAACAACGAACGATGCTTGGAGAAAGCTTGTATCCTTTGGTGGATCAGTTGGAACATGATCATGCAGCCAAAGTTACTGGTATGCTTTTGGAAATGGACCAAACTGAGGTTCTTCATTTGTTGGAGTCTCCTGAAGCCTTGAAGGCTAAAGTTGCAGAAGCGATGGAGGTTCTACGGAATGTGGCACAAGCTCCACAAACTCCCGCTGATCAGCTTGCAGCGTTATCTTTGAATGAGACTCTTGTGTCGTAA___TGTCATGTTGGTTGTACCATATTTATTTTTGGATTGGACTCGTATTGACATACTCGTTAGTTACATTACTAGTTAGATTACTATTTAGAACGGATAAGAATAGTTCAGAGCGTTAAGAGCTTGTTTTGGCTTGTCTTAGATTTTAAGGTAAAACAGTGTTATGAAAATTATATTTCCGTACTCAGGGAAAGTACCTATCTGTTGGTTATGACTATACTTTTGAAAAGTTTTGACTTGGGATTCAAGGTGCTTTTTTTTAATTGCCTTATGTTTTATTTGCTTTTACTAGATGTAACTAATATATTATTATGACATC

Fln Alignment:

sp_v1.1_unigene5077___MRDAEGKSKCFGFVNFENADDAANCVESLNGKKIDGKEWYVGKAQKKSERESELRGRFEKL
D5A9S1______________MRDFHGHSKGSGFVAFSSPDEASRALAEMNGKIVVSKPLYVALAQRKEERRARLQAQFSQL

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
96		33		66	0.997452
153			33	66	0.997452
273	33			66	1.0
312	33		66		1.0
315		33	66		1.0
316	66		33		0.997452
321			33	66	1.0
323	33		66		1.0
325			33	66	1.0
341			33	66	1.0
348			25	75	0.996473
349			75	25	0.996473
355		66		33	0.997452
356	33	33		33	0.997753
360		33		66	0.997452
362	33		33	33	0.997753
363		33		66	1.0
364		66	33		0.997452
367	33	66			0.997452
368	33		33	33	0.997753
370		83		16	0.994512
371	16	83			0.994512
439		20	80		0.995493
755	80			20	0.995493
756	80			20	0.995493
757		20		80	0.995493
761	80		20		0.995493
765	66		33		0.997452
767	66	33			0.997452
769	66		33		0.997452
770			25	75	0.996473
771		25		75	0.996473
772		25	75		0.996473
774	75	25			0.996473
778	25			75	0.996473
779	75	25			0.996473
782		25		75	0.996473
1028	75	25			0.996473
1029	75			25	0.996473
1031		25		75	0.996473
1033		25		75	0.996473
1034	25		75		0.996473
1035			25	75	0.996473
1039	75		25		0.996473
1040	66			33	0.997452
1761		33		66	0.997452
1932		2		97	0.941605
2057	97		2		0.917783
2456	5			73	1.0
2458	20	60		6	1.0
2461			83	16	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
268	279	CAG CAG CAG CAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain