SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5064

Length: 1069 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5064

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF566 domain containing protein	-	-	7.0e-06	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	unknown [Picea sitchensis]	-	-	9.66896e-44	94%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2A5

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: EKLKASVSNLRPPGPLRSLEGRHSRLSESAEAQLPGNNPSSSPESPRDSNSSPISKGCSTSAASSPRGNSNSRPPKKTSRTFVASSPSVRSRRSCSLSPSPPRACFCGSPKKLLRSLSSKRSSGSSKMKKSESHIGEDELTAAVVSEKSKMRARNKDRVRAKDELDSLSDDEFLTDLSTFSLKGHRKQLKKVLKEEQKVNRDAEDLVKWVKQASARIDDRVLDDLLSDEEEFK*

Protein Length: 235

Fln nts: ATGGGGCTTGACGAACATTTGGTTAAAATCACCACCAATTGAATCGGAGGCCGAGGCTCTGCGAGTCACGGCCTCGCCCCAGAGCTGGAAAGCAGGTAGGAAAAGCTCAAGGCATCGGTTTCGAACCTCAGACCTCCGGGTCCTCTTCGAAGTCTAGAAGGACGTCACAGCCGTCTTTCCGAATCGGCAGAGGCTCAATTGCCTGGAAATAATCCATCGTCCTCCCCAGAGTCGCCAAGGGATTCGAACTCGAGCCCCATCAGCAAGGGTTGCAGCACGTCTGCTGCGTCTTCGCCTCGGGGGAATTCGAACTCGAGACCCCCTAAGAAGACTTCAAGAACATTCGTGGCGTCATCACCGTCTGTGCGCTCTCGGAGATCGTGTTCATTGTCGCCTTCTCCTCCCAGGGCTTGTTTCTGCGGGTCTCCGAAGAAGCTTTTGAGAAGTTTGAGCTCGAAGAGATCCTCGGGTTCCAGTAAAATGAAGAAATCTGAATCCCATATTGGCGAAGATGAACTCACGGCTGCTGTCGTTTCTGAGAAGTCGAAAATGAGGGCTCGGAATAAGGACAGGGTCAGGGCGAAGGACGAACTGGACTCGCTGTCTGACGATGAATTTCTGACGGATTTGAGTACTTTTTCATTGAAAGGCCATAGGAAGCAGCTCAAGAAAGTTCTCAAGGAAGAACAGAAGGTGAACCGAGATGCAGAGGATTTGGTCAAGTGGGTGAAGCAGGCCTCGGCAAGGATAGACGATAGGGTTTTAGATGACTTGCTTTCTGATGAAGAAGAATTCAAGTAA___GAACACTTAATATTATTTGCATGAAAGGTGGGAGAATGAAGGTGGAGAGAATGATCTGTTATGCAGAAAATCATTGCAGACTTTGATCCTGTCCATTGGTTTGCGCTCTGTAAATTGGCATAAAGATACGTAAAGGTATGCTAAGCAGGAAATTCAATTTTGTGTAAATGTTTCTGACAAAGATATTTTGATTCCGGGGATTGATGTAAAGATTATATATGGCAGATCTTTCAAACACCTATAGTTCCTATGGATAATTACAATGTAA

Fln Alignment:

sp_v1.1_unigene5064___LESR*EKLKASVSNLRPPGPLRSLEGRHSRLSESAEAQLXXXXXXXXXXXXXXXXXXX--ISKGCSTXXXXXXXXXXXXXXPKKTSRTFVAXXXXXXXXXXXXXXXXXXXACFCGXXXXXXXXXXXXXXXXXXXXXXXXXHIGEDELTAAVVSEKSKMRARNKDRVRAKXXXXXXXXXXXXXXXXXFSLKGHRXXXXXXXXXXXXXNRDAEDLVKWVKQASARIDDRVLDDLLSDEEEFK
A9P2A5______________MESRYEKLKASVSNLRPPGPPQSLEGRHSRLSESAEAQLPGNNPTSSAESPRDSDSNSNPISEGRSTSAATSPRGNSNSRPPKKTSRTLMASSPSVRSQRSCSLSPSPPRSCFCGSPKKLLRSLSSKRSSGSCKMKKSDSHIGDDELTAAVVSEKSKMRVRNKDRGRPKDELDSLSDDEFLTDLSTFSLKGQRKQLKKALKEEQKVNRDAEDLVKWVKQASARMDDRVLDDLLSDEEEFK

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
53		75	25		0.996473
54		75	25		0.996473
230		16	83		0.994512
241	16		83		0.994512
900	85	14			0.993533
914		14		85	0.993533
1035		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain