SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5052

Length: 1543 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene5052 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptidase_M16 multi-domain protein	-	-	3.0e-19	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	protein	-	-	0.0	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	0.0	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	78%

Source	InterPros	Term	Type	Identity
Blast2go	Peptidase M16, C-terminal	IPR007863	-	78%
Blast2go	Peptidase M16, core	IPR011237	-	78%
Blast2go	Metalloenzyme, LuxS/M16 peptidase-like, metal-binding	IPR011249	-	78%
Blast2go	Peptidase M16, N-terminal	IPR011765	-	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQM8

Fln msg:

Fln protein: MRSYRMIATQRGFDRGVFSPRSVTGIELGVMSLAAYSIKDRDVWKADKNHCLA*

Protein Length: 55

Fln nts: ATGGGAAAACAAAACAAAATTATCAGAATGCGAGCGACTGGTTCTGAATAGAAGGAATCAGGGGAAGGAGGAAAGCAAAGCGAGGGTTTCGCTTGCTCGCGCTCTCTCTCGCGAGGGTTCAGTCATTTCTGGCGGGAGGCATAAATGGCCACAACGGTCATCTCGACTCCACCTCTATGTCCGTTGA_-_ATGCGAAGCTACAGGATGATCGCTACGCAGCGGGGATTCGATCGCGGGGTCTTCAGCCCTCGCTCTGTTACAGGAATCGAGTTAGGAGTGATGTCGCTGGCCGCATATTCCATCAAAGATCGAGATGTCTGGAAGGCAGACAAAAATCACTGTCTCGCATGA___CCTTCAGTGCAGACAGTAAGAAATCTAGGCAATTCTTCTCGGAGTTGAGTGCTGTGTCTGGTTTACATGAGTCACAGGAATATCTAGCATGCACCAGAAGACGGAGTTCTAATCAACTGGTTCTTCAGAGGAAAGCTTTTATGGGCCTTTCTTCTCAACAACAATCTTTATTTACAAATTCTAATTTTCTCCTTTGGCGGAGGCCACAGAAACTATCTGATTTTCATGGTCTTTTGAAACACTCAGCTATAGCACCTTTGGCAACAATAGGGCCAGATGAGCCACATGTGGCAAGCACAGCATGGCCTGAGGATGGCTTACTAGAGAAACAAGGACTAGGAGTATGGGAGCATGAAATTAAAGGTACTGATATGGAAGGATTCTTAAGTTCCAGGATTCCATCTCATCCTAAGCTGTATCGTGGACAACTTAAGAATGGACTACGCTATGTGATTCTCCCCAACAAAGTTCCTCCTAATAGATTTGAGGCTCACATGGAAATTCATGTTGGATCTGTCGATGAGGATGAAGATGAGCAGGGCATTGCCCATATGATTGAGCATGTTGCTTTCCTTGGAAGTAAGAAGCGTGAGAAACTTCTTGGTACAGGAGCTCGGTCTAATGCATACACAGATTTTCATCATACTGTGTTTCATGTCCATTCTCCTTTCATGAGCAAGGATTCAGATGGACCTTTGTTGCCATTTGTACTGGATGCCTTACATGAAATCGCTTTCCAGCCTAAATTTCTTTCATCACGGGTTGAGAAAGAGAGGCGGGCTGTTCTTTCAGAGCTTCAAATGATGAACACTATAGAATACAGGGTTGATTGCCAGTTGCTGCAACAACTACATTCAGAAAACAAACTGGGTAGAGGATTTCCGATTGGATTGGAGGAGCAGATTAAAAAATGGGATGTGGAGGCAATTAAAAACTTTCATGAGCGTTGGTACTTCCCTGCTAATGCAACACTATATATTGTGGGAGATATAGATAGTGTTCCAAAGACAGTGTATCACATAGATGCTGTGTTTGGGCGAACTCCTTCTGGAGGTGAATTCTCTGTTGCACATCCTCCAAATGCATTTGGTACTATGGCCAACTTTCTTGCACCCAAGCTACCAACTGCATTAGCTGGTGCTGTTATTGGTGAAACACCATCTTCTTTAGTAGTACAACAATCAAAACAGTTAA

Fln Alignment:

sp_v1.1_unigene5052___MRSYRMIATQRGFDRGVFSPRSVTGIELGVMSLAAYSIKDRDVWKADKNHCL
A9NQM8______________MRSYRMIAMPRGFDRGIFSPRSVTGIELRVTLPAAYSIEDRDIWKADENHSL

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
321		85		14	0.993533
759		60	40		1.0
974	80		20		0.995493
975	80			20	0.995493
976	80		20		0.995493
977	20			80	0.995493
982	75	25			0.996473
983	25			75	0.996473
986			25	75	0.996473
988		25		75	0.996473
989	25	75			0.996473
990		25		75	0.996473
992	25			75	0.996473
993		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain