SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5049

Length: 893 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene5049 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	heat shock protein, putative (EC:1.3.1.74); K03283 heat shock 70kDa protein 1/8	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	heat shock	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	response to heat	GO:0009408	Biological Process	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%
Blast2go	cell wall	GO:0005618	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heat shock protein Hsp70	IPR001023	-	0.0	82%
Blast2go	Heat shock protein 70	IPR013126	-	0.0	82%

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
160			20	80	0.995493
165	20			80	0.995493
321		12		87	0.992554
329		37		62	1.0
336		12		87	0.992554
338	87	12			0.992554
339	12			87	0.992554
415		14		85	0.993533
488		33		66	1.0
636		20		80	0.995493
728	80	20			0.995493
729		20	80		0.995493
730	80	20			0.995493
731	20		80		0.995493
732	80			20	0.995493
734		80		20	0.995493
835		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain