SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5044

Length: 1915 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene5044 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	3-deoxy-D-arabino-heptulosonate-7-phosphate synthase n=1 Tax=Vitis vinifera RepID=B9VU85_VITVI	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	phospho-2-dehydro-3-deoxyheptonate aldolase chloroplast	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	carboxylic acid biosynthetic process	GO:0046394	Biological Process	0.0	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	DAHP synthetase, class II	IPR002480	-	0.0	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMP9

Fln msg:

Fln protein: MAFAASQMSVTRSPLPLNKHLGRTAEDCGFYNPLNQKMLARAKGIKRKRLALRVDAVQVPEIGVLSSSSTPGSLNGWTLDSWKSKNALQLPQYPDAEELESVVDLLKTFPPLVFAGETRKLEERLGEAALGKAFLLQGGDCAESFKEFNANNIRDTLRVLLQMGVVLMFGGQMPVIKVGRMAGQFAKPRSDDFETVDGVKLPSYRGDNVNGDTFNLKARLPDPQRMVRAYCQAAATLNLIRAFATGGYAAMQRVIQWNLDFTSNSEQGEKYMELAHRVDEALGFMSACGLTVDHPVMNSTEFWTSHECLLLPYEQAMTREDSTSGLWYDCSAHMLWVGERTRQLDGAHIEFLRGVANPLGLKASDKMDPAELVKVCEILNPTNKPGRMTIIVRMGAEKLRLKLPHLIRAVRQAGLIVTWVSDPMHGNTIKAPSGLKTRPFDAIRDELKAFFDVHEEEGSHPGGVHLEMTGQNVTECIGGSRVVTLDDLKSRYHTHCDPRLNASQSLELAFIIAERLRRGRMTKADVGILSLLKGLANV*

Protein Length: 540

Fln nts: GCGTCCCATAACTTTCCTGTGAAAGTCTAATCCCCATTTCCTTCAGTCATCACTCTGTTTTTCGCCATTTTTGGCTCAAACTTTGTGCGAATA_-_ATGGCATTTGCTGCTTCACAAATGTCTGTCACAAGATCTCCGTTGCCCTTGAACAAGCACTTGGGAAGAACAGCTGAAGACTGTGGCTTCTACAATCCATTGAATCAGAAAATGCTGGCAAGAGCAAAGGGCATTAAGAGGAAGAGGCTGGCACTTAGAGTTGATGCTGTTCAGGTTCCCGAAATTGGAGTGCTGTCATCCTCATCCACTCCAGGCTCTCTTAATGGGTGGACACTTGACAGTTGGAAATCCAAAAATGCCCTTCAGCTGCCCCAATACCCAGATGCTGAAGAACTGGAGTCTGTCGTGGATCTTTTGAAGACCTTTCCTCCTTTGGTATTTGCCGGAGAGACACGGAAACTGGAAGAAAGGCTCGGAGAAGCTGCTCTGGGGAAGGCTTTTCTGCTGCAGGGAGGGGACTGTGCAGAGAGTTTTAAGGAATTCAATGCTAATAACATACGAGATACCTTGCGTGTGCTCCTGCAGATGGGTGTTGTGCTCATGTTTGGAGGGCAAATGCCTGTAATCAAAGTGGGGCGAATGGCTGGGCAGTTTGCTAAACCCAGATCAGATGATTTTGAAACTGTGGATGGTGTGAAACTACCAAGTTACAGAGGAGATAATGTTAACGGTGATACTTTCAATCTGAAAGCTCGGTTGCCAGATCCTCAAAGGATGGTTCGTGCTTATTGCCAAGCTGCAGCAACCCTCAACCTTATTCGGGCGTTTGCAACAGGAGGTTATGCAGCAATGCAGCGTGTAATTCAGTGGAATTTGGATTTCACCTCTAACAGCGAGCAAGGGGAGAAGTATATGGAGCTTGCCCATCGTGTCGATGAAGCTCTTGGATTCATGTCTGCCTGTGGCCTTACAGTTGACCATCCCGTTATGAATTCCACTGAATTCTGGACATCCCATGAATGCTTGCTACTCCCATATGAGCAAGCAATGACCAGGGAAGATTCAACTTCTGGATTGTGGTATGATTGCTCTGCTCATATGTTGTGGGTTGGTGAACGCACCAGGCAGCTTGATGGTGCACATATTGAGTTCTTGAGAGGTGTCGCTAATCCTCTGGGTCTCAAGGCTAGTGATAAAATGGACCCAGCAGAGTTGGTGAAGGTCTGTGAGATATTGAACCCTACAAATAAACCAGGGAGGATGACAATAATAGTCCGAATGGGTGCTGAGAAATTGAGGTTGAAGCTACCCCATCTAATCAGAGCAGTGCGCCAGGCAGGCTTGATTGTTACATGGGTCAGCGACCCTATGCATGGTAACACAATTAAAGCACCTTCTGGGCTGAAGACACGTCCATTTGATGCTATCCGGGATGAACTCAAGGCATTCTTTGATGTCCATGAAGAGGAAGGTAGCCACCCTGGAGGTGTCCATTTAGAGATGACAGGACAAAATGTGACAGAATGTATTGGTGGATCTAGAGTAGTAACTCTAGACGATCTCAAATCTAGGTACCATACACATTGTGATCCTCGACTGAATGCCTCACAGTCACTGGAACTTGCTTTTATTATCGCCGAAAGACTGAGAAGAGGAAGAATGACAAAAGCTGACGTGGGAATCCTAAGCTTACTGAAAGGTTTAGCTAATGTGTAA___CTGTGGTTTTGATGAAAAATTTAGAAAAAGTGGACAGGCTTTCCCATTCAGGCCAGGCAGATCCTTGCAGCCGGTATAAAATCAATATGTATTTCCCCCCCATGATATTGTGAACTTCAGCATTAAACTCCATGTTGATGACACCTGTCCCACTTATGTATATGAGTTTGGTTAATTGGTATATATATATATTTTGCTCTACCCG

Fln Alignment:

sp_v1.1_unigene5044___MAFAASQMSVTRSPLPLNKHLGRTAEDCGFYNPLNQKMLARAKGIKRKRLALRVDAVQVPEIGVLSSSSTPGSLNGWTLDSWKSKNALQLPQYPDAEELESVVDLLKTFPPLVFAGETRKLEERLGEAALGKAFLLQGGDCAESFKEFNANNIRDTLRVLLQMGVVLMFGGQMPVIKVGRMAGQFAKPRSDDFETVDGVKLPSYRGDNVNGDTFNLKARLPDPQRMVRAYCQAAATLNLIRAFATGGYAAMQRVIQWNLDFTSNSEQGEKYMELAHRVDEALGFMSACGLTVDHPVMNSTEFWTSHECLLLPYEQAMTREDSTSGLWYDCSAHMLWVGERTRQLDGAHIEFLRGVANPLGLKASDKMDPAELVKVCEILNPTNKPGRMTIIVRMGAEKLRLKLPHLIRAVRQAGLIVTWVSDPMHGNTIKAPSGLKTRPFDAIRDELKAFFDVHEEEGSHPGGVHLEMTGQNVTECIGGSRVVTLDDLKSRYHTHCDPRLNASQSLELAFIIAERLRRGRMTKADVGILSLLKGLANV
B8LMP9______________MAFAASRMSVTRCALPLNKPLGRTAEDCGFYNPLNQKMLAREKCIKRKKMPLIVEAVQVPEIGVPSSSSSPGSLNGWKLDSWKSKNALQLPQYPDAEELDSVVDLLKTFPPLVFAGETRKLEERLGEAALGKAFLLQGGDCAESFKEFNANNIRDTLRVLLQMGVVLMFGGQMPVIKVGRMAGQFAKPRSDDFEILDGVKLPSYRGDNINGDTFNLKSRQPDPQRMVRAYCQAAATLNLIRAFTTGGYAAMQRVIQWNLDFTSNSEQGDKYMELAHRVDEALGFMSACGLTVDHPVMNSTEFWTSHECLLLPYEQAMTREDSTSGLWYDCSAHMLWVGERTRQLDGAHLEFLRGVANPLGLKASDKMDPAELVRVCEILNPTNKPGRMTIIVRMGAEKLRLKLPHLIRAVRQAGLIVTWVSDPMHGNTIKAPSGLKTRPFDSIRDELKAFFDVHEEEGSHPGGVHLEMTGQNVTECIGGSRVVTLEDLKSRYHTHCDPRLNASQSLELAFIIAERLRRGRMTKADAGILSLLKGLANV

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
111	33		66		0.997452
470	88	4			0.999262
552	91	8			1.0
553		8		91	1.0
555	2		91	5	0.995912
1348		85		14	0.993533
1409		14		85	0.993533
1412	16	83			0.994512
1628		37		62	1.0
1629	75		25		1.0
1733			75	25	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
14	26	AT AT AT AT AT AT A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain