SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5043

Length: 1526 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5043

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ethylene-overproduction protein 1 n=4 Tax=Arabidopsis RepID=ETO1_ARATH	-	-	80%
FL-Next	sp=Ethylene-overproduction protein 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	80%
Blast2go	protein	-	-	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	90%

Source	InterPros	Term	Type	Identity
Blast2go	Tetratricopeptide TPR-1	IPR001440	-	90%
Blast2go	Tetratricopeptide-like helical	IPR011990	-	90%
Blast2go	Tetratricopeptide repeat-containing domain	IPR013026	-	90%
Blast2go	Tetratricopeptide repeat	IPR019734	-	90%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: O65020

Fln msg: your sequence is shorter than subject: 257 - 951

Fln protein: HASHEHERLVYEGWILYDTGHREEALKKAEESIAIQRSFEAYFLKAYALADTSLDPASSANVIVLLEDALKCPSDGLRKGQALNNLGSVYVDCGKLDLAADCYVSALNIRHTRAHQGLARVFYLKNDRKSAYEEMTKLIEKARNNASAYEKRSEYCERDMAKADLSMATQLDPLRTYPYRYRAAVLMDDHRENEAIAELSKAIAFKPDLQLLHLRAAFHESLGEMEAAIRDCRAALSVDPNHADTVELYNRVSGRK*

Protein Length: 258

Fln nts: GCATGCTAGCCATGAGCATGAAAGGTTAGTGTATGAAGGGTGGATTTTGTATGACACTGGTCATCGTGAAGAGGCATTAAAGAAGGCAGAAGAATCTATTGCTATTCAAAGATCATTTGAGGCGTATTTTTTAAAAGCTTATGCTCTGGCAGACACAAGCCTGGACCCTGCATCCTCTGCTAATGTTATAGTGCTTCTTGAAGATGCTCTGAAATGCCCCTCTGATGGGCTTCGTAAAGGACAAGCCTTGAACAACCTAGGCAGTGTTTATGTGGATTGTGGTAAGTTGGATCTGGCTGCAGATTGTTATGTCAGTGCTCTCAATATTCGTCATACAAGGGCTCATCAGGGATTGGCAAGGGTATTTTATCTTAAGAATGATAGGAAATCTGCATATGAAGAAATGACAAAGCTCATTGAAAAGGCCAGGAACAATGCATCTGCTTATGAAAAGCGTTCGGAGTATTGTGAACGTGATATGGCAAAGGCTGACCTGAGTATGGCAACACAATTAGATCCACTTAGAACGTACCCATACAGATATAGAGCTGCAGTATTAATGGATGATCACAGAGAAAATGAAGCAATTGCAGAACTTTCAAAGGCGATAGCATTTAAGCCTGATTTGCAATTGCTGCACTTACGAGCAGCATTCCACGAGTCCTTAGGAGAGATGGAAGCTGCTATCCGCGATTGCCGGGCAGCACTTTCGGTAGATCCAAATCATGCGGATACCGTTGAACTTTATAATAGGGTTTCTGGTCGGAAATAA___GCTGTCTTCTGTCAGGGCCGGACCGAACTCTGGTCGTCTCGCAAACTTCCAGGGTTTGAGAGGACCAGTTCTGGTATATCACTAATCTCCATGTTGTGTGGGACGGTGGAATATCTACATCTTTCATTGCATGCTGGAATCTCTTTACCGTTGTTTCTCTAAAATTCACAAAAGACGGTGTACGTTGGCTGATTCCAGTATTTTCCTGAACATGAGGAATTTGCGAATGGTGAGTTGTTTCGATCAAATCTCCCATACTGCTGTTCGATTGTATAATTACGCGAGATTCAATCTTCATAGTGGTACCTTGCGAAGCTGCTGCATTGTTATCAAAAGTAATTTATTGAATTAATTCACTAGGCTACAATGTGCTTTCTGCTTCTGCTATTGTTAGCATGGCACAAAGTGCAAAATCTAAAGACCAGCAAAGGCTTTCATGGATAGCCATCTGGAGCCCTCATCATGTATCATGTACAGGTTAATCTGTGGAACAGTATATTGTATGTATGGCGGGCCTTGGGCTGCCTTACAAATAAAATCATCTTCAACTCAGTTGCTGAATTTATTCCAATTTTTTAATGGACAAAGCAATTGTTTTCCATGAAGCTTTGATGTGTATAAACTCAAGTAAAATGGTTAAAGCAGCAGTCCGGAGTTGCTTTATTTAACCATTCGTTCTATTTATCTGGTAACCTCTTGGTTGCTCAAAATATTAGTGAAATTTCATTCGAAATTAAAAAAAAAAAACTAAAAC

Fln Alignment:

sp_v1.1_unigene5043___HASHEHERLVYEGWILYDTGHREEALKKAEESIAIQRSFEAYFLKAYALADTSLDPASSANVIVLLEDALKCPSDGLRKGQALNNLGSVYVDCGKLDLAADCYVSALNIRHTRAHQGLARVFYLKNDRKSAYEEMTKLIEKARNNASAYEKRSEYCERDMAKADLSMATQLDPLRTYPYRYRAAVLMDDHRENEAIAELSKAIAFKPDLQLLHLRAAFHESLGEMEAAIRDCRAALSVDPNHADTVELYNR
O65020______________HSKSEHERLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSTLDPDSSNYVIQLLQEALKCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYTNALTIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKAQNNASAYEKRSEYCDREMAQSDLCLATQLDPLRTYPYRYRAAVLMDDHKESEAIDELSRAISFKPDLQLLHLRAAFYDSMGEGASAIKDCEAALCIDPGHADTLELYHK

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
115	66		33		0.997452
151			83	16	0.994512
153	83		16		0.994512
159	83			16	0.994512
160	83			16	0.994512
162		83	16		0.994512
166			83	16	0.994512
169	16	83			0.994512
488	85	14			0.993533
498	14		85		0.993533
552		14		85	0.993533
703			85	14	0.993533
706		14	85		0.993533
710	12			87	0.992554
712			12	87	0.992554
713		87	12		0.992554
1324		11		88	0.923564
1349	14			85	0.993533
1352	85		14		0.993533
1353	85		14		0.993533
1354			10	90	0.90298
1374	11	88			0.923564
1375	88		11		0.923564
1462	16		83		0.994512
1509	33			66	0.997452
1510	33			66	0.997452
1511	66	33			0.997452
1512	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain