SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5034

Length: 2631 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene5034
CGTCGTGACCTTGGCTGTCACTCACTTTTGGCACAACTCTCTCCTGAAAATGCCTCCCTTTTGGACCCACAAGTGTTCAAGGAACCGCCAACCAACTTTCGCAGCATAAACATTTAGAGGCGTTGTCACAGATGCACGGAAATCCATCTTTAATTCGCGACACTGGTTACTGAAACAGGACGAAAAAGGATGCCTAAAAGGAAGAGGAATCACTATGCTGCAGAGTTTGGCGAGAAGATGGCCAGCACGGGAAGCCTTTCTGATGATACACTGCTCTCCATTTTTTCACACATTTCAACTCGAGATTTGCTTTCTCGGCTGGCTCTAGTCTGCAGGCGTTGGCGGCGCGTTACAAAGTCCTCTATGGTTAAAGAGCTGGTGCCTTCCATTCTATGCCGCTACGACCGGCCTTGGGGATCCGTGAATGAGAGAGATTTTGTAAGACTATGTTCTGGACATTCCAACTCTTTGGAGAAAGTTAGCTTGAATCGATTCAAGCTGGACACTGACCGGGTTATTTCACTAATAGTATCATTCCCAAATCTCAAGGATCTGTCAATTATTTCATGTGAATTTCTTACCTCAACTGACCTAGAAATTATTGCTAAAGTTCTTCCAGATCACCTTGTCAATCTCGATTTTCATGTGGACAGCCAATTTCACTCAAAAATTCCATCATTTTGTGATGGTATTGTTGATGCTGTGAGCCATAAATGCCCAAATCTTCAGAAGTTAGACCTTGATGGCTGTGTACAAATCTCAAAAGAATGTCTCTATAGATTTTTAGATTTGAAAATGTCCATCAAAATCCTTGATTTATATAGTGATGCCATTGGTTGGCCAGAACTTGGACATATCTTTGTGTCTCTTGAACAATTGCAGCACTTGTCTGTTGTGTCATCAAAGTTCAATGAAGCTCTAGACTCTAGTGAAGATGAGGATGATTTATCAGATGGAAGAAGGATGGGGTTTAGGAGGCGTTTAAAAAACAGGGATTATGCATCTCATCCTTCAGGTTCGGAGTCATATGGTGCTTTGGTTCCGTGTTGTTTATCCTCCTTGCGTCTTTACCATTCTCCACATCACTCTGTGTCTTTTAGTACAGCTCCATTCTCTGCACTAATAAAGGATATTGGCCATCAATTACATCATTTACATGCACAAAATGTGTTCCACACAAGCTGGCATACTATTTCAGTTTGGTGTGGTAATCTGGAAACGCTAGATTTGTCACACGAAAGGAACAAGGAACTTCTACTCACTGGGATTGAAGAAGTTATACTTTGTGGCATTCCACGCTTGTTGAAAAATCTCAAAAAGATTTCTCTTCCAACGGCGTTTGATAATGTTTTACTTGAGCTAGGTCGGTTTTGTCCTAAACTGAAGGAGCTGAGAGTTGAGGGTTTTAGTTGCACAGTTTCTAGAACAATGAAAGAGCAGGCAGTTACAGATAGAGGAGTGATAGCCATCGCTGGAGGTTGCCCAGAACTTGAGGTATTGAGCTTAAGTGGTTGTTGGAAGGTGACTGATTCAGCCATAAGGGCACTTGCATTTCAATGTAGACAACTGAAAATCTTGCATCTCACTAGTTGCAAGAATCTAACAGATATTGGCGTTACCCTACTTCTGCAACAACTGAACTGTTCACTGTGGCTACTTGATCTTGTGGGATGCGTAAAGATCACTAAAGGATTTATTGTTTCCTTTTCACATCTTACAAAGGATCAAGGATCTAGTCTTCGAGTTTTGGCAATCTCTGTGCGTCTTTGGAATTCCTCACAAAAAGAGCTCGCAAAATTGAAGATGTTTGCACCTTATTTGAATGTGAGAGTACATTCAAGTGTTATTCCATGGGATGGATTTTACCATTCACAGTCCTTGCAAGTTTAGCTCTGTATGTCTAAGTAATCCGAAGTCATGAAGCTGTTCAACATTATCAGACAGAAGGACAACATGATCAGAGGAGAGTTCATAGTATATAGAAGTCTTCTAGAGTATTTCTTCAATATGATTTGTTAGTTTCCATTTCAGAACCAGTTCCCTTTGGTGATATAATTCTTGTTTAGAATAGTGTTTTCAAGAAGATTTGTTATTGCAATATGGTTACATGATGTTCTTGGTATTTAGTTCAGCTCATGGGACAATCCTAATGTCTTTAATCAGGATTGAAAATCCATCTATTTGAAATTGAAGATGTTTGCACCTTATTTGAGTGTGACAGTAGGTTCATGCATTATTCCATGGGACAGATTTTACTATTCATAGTCCTTGCAAATTTGGTTATAATTTGGTTATATTTCCAAGTATTGTCCAAGTAACAGATATAGTTCCTTGTTTACAGTAGTGTTTTCCGGAGTCTTTGCTACTGCACTGTGGTTACATGATGTTCTTGATATTTAGTTCATCACATGTGACAAGGCAAGGTTGACAATCCATCTATTTGTTTCTATTGTAAGGAATTAAATGCTCACAGGTCTGAATTTGCAATCACTAAAGTTGGAAATATATTGTGTAGTGGAAGCACGCAAAAGCAGACTTATGGATCGATTGCAAGGAAACCTATTTAATGACAAGTTATTTCATGTCATTAGGTTAATTTCAACAACTTGAAATGTGCCTTTCTTAATGTAA

Ace file of the UniGene sp_v1.1_unigene5034 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	similar to F-box and leucine-rich repeat protein 2; K10268 F-box and leucine-rich repeat protein 2/20	-	-	7.0e-11	31%
FL-Next	sp=F-box protein SKP2B; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	34%
Blast2go	predicted protein [Physcomitrella patens subsp. patens]	-	-	0.0	51%

Source	InterPros	Term	Type	Identity
Blast2go	F-box domain, cyclin-like	IPR001810	-	51%
Blast2go	Leucine-rich repeat, cysteine-containing subtype	IPR006553	-	51%
Blast2go	F-box domain, Skp2-like	IPR022364	-	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O49286

Fln msg: your sequence is longer than subject: 567 - 360

Fln protein: MPKRKRNHYAAEFGEKMASTGSLSDDTLLSIFSHISTRDLLSRLALVCRRWRRVTKSSMVKELVPSILCRYDRPWGSVNERDFVRLCSGHSNSLEKVSLNRFKLDTDRVISLIVSFPNLKDLSIISCEFLTSTDLEIIAKVLPDHLVNLDFHVDSQFHSKIPSFCDGIVDAVSHKCPNLQKLDLDGCVQISKECLYRFLDLKMSIKILDLYSDAIGWPELGHIFVSLEQLQHLSVVSSKFNEALDSSEDEDDLSDGRRMGFRRRLKNRDYASHPSGSESYGALVPCCLSSLRLYHSPHHSVSFSTAPFSALIKDIGHQLHHLHAQNVFHTSWHTISVWCGNLETLDLSHERNKELLLTGIEEVILCGIPRLLKNLKKISLPTAFDNVLLELGRFCPKLKELRVEGFSCTVSRTMKEQAVTDRGVIAIAGGCPELEVLSLSGCWKVTDSAIRALAFQCRQLKILHLTSCKNLTDIGVTLLLQQLNCSLWLLDLVGCVKITKGFIVSFSHLTKDQGSSLRVLAISVRLWNSSQKELAKLKMFAPYLNVRVHSSVIPWDGFYHSQSLQV*

Protein Length: 568

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTTTGGCACAACTCTCTCCTGAAAATGCCTCCCTTTTGGACCCACAAGTGTTCAAGGAACCGCCAACCAACTTTCGCAGCATAAACATTTAGAGGCGTTGTCACAGATGCACGGAAATCCATCTTTAATTCGCGACACTGGTTACTGAAACAGGACGAAAAAGG_-_ATGCCTAAAAGGAAGAGGAATCACTATGCTGCAGAGTTTGGCGAGAAGATGGCCAGCACGGGAAGCCTTTCTGATGATACACTGCTCTCCATTTTTTCACACATTTCAACTCGAGATTTGCTTTCTCGGCTGGCTCTAGTCTGCAGGCGTTGGCGGCGCGTTACAAAGTCCTCTATGGTTAAAGAGCTGGTGCCTTCCATTCTATGCCGCTACGACCGGCCTTGGGGATCCGTGAATGAGAGAGATTTTGTAAGACTATGTTCTGGACATTCCAACTCTTTGGAGAAAGTTAGCTTGAATCGATTCAAGCTGGACACTGACCGGGTTATTTCACTAATAGTATCATTCCCAAATCTCAAGGATCTGTCAATTATTTCATGTGAATTTCTTACCTCAACTGACCTAGAAATTATTGCTAAAGTTCTTCCAGATCACCTTGTCAATCTCGATTTTCATGTGGACAGCCAATTTCACTCAAAAATTCCATCATTTTGTGATGGTATTGTTGATGCTGTGAGCCATAAATGCCCAAATCTTCAGAAGTTAGACCTTGATGGCTGTGTACAAATCTCAAAAGAATGTCTCTATAGATTTTTAGATTTGAAAATGTCCATCAAAATCCTTGATTTATATAGTGATGCCATTGGTTGGCCAGAACTTGGACATATCTTTGTGTCTCTTGAACAATTGCAGCACTTGTCTGTTGTGTCATCAAAGTTCAATGAAGCTCTAGACTCTAGTGAAGATGAGGATGATTTATCAGATGGAAGAAGGATGGGGTTTAGGAGGCGTTTAAAAAACAGGGATTATGCATCTCATCCTTCAGGTTCGGAGTCATATGGTGCTTTGGTTCCGTGTTGTTTATCCTCCTTGCGTCTTTACCATTCTCCACATCACTCTGTGTCTTTTAGTACAGCTCCATTCTCTGCACTAATAAAGGATATTGGCCATCAATTACATCATTTACATGCACAAAATGTGTTCCACACAAGCTGGCATACTATTTCAGTTTGGTGTGGTAATCTGGAAACGCTAGATTTGTCACACGAAAGGAACAAGGAACTTCTACTCACTGGGATTGAAGAAGTTATACTTTGTGGCATTCCACGCTTGTTGAAAAATCTCAAAAAGATTTCTCTTCCAACGGCGTTTGATAATGTTTTACTTGAGCTAGGTCGGTTTTGTCCTAAACTGAAGGAGCTGAGAGTTGAGGGTTTTAGTTGCACAGTTTCTAGAACAATGAAAGAGCAGGCAGTTACAGATAGAGGAGTGATAGCCATCGCTGGAGGTTGCCCAGAACTTGAGGTATTGAGCTTAAGTGGTTGTTGGAAGGTGACTGATTCAGCCATAAGGGCACTTGCATTTCAATGTAGACAACTGAAAATCTTGCATCTCACTAGTTGCAAGAATCTAACAGATATTGGCGTTACCCTACTTCTGCAACAACTGAACTGTTCACTGTGGCTACTTGATCTTGTGGGATGCGTAAAGATCACTAAAGGATTTATTGTTTCCTTTTCACATCTTACAAAGGATCAAGGATCTAGTCTTCGAGTTTTGGCAATCTCTGTGCGTCTTTGGAATTCCTCACAAAAAGAGCTCGCAAAATTGAAGATGTTTGCACCTTATTTGAATGTGAGAGTACATTCAAGTGTTATTCCATGGGATGGATTTTACCATTCACAGTCCTTGCAAGTTTAG___CTCTGTATGTCTAAGTAATCCGAAGTCATGAAGCTGTTCAACATTATCAGACAGAAGGACAACATGATCAGAGGAGAGTTCATAGTATATAGAAGTCTTCTAGAGTATTTCTTCAATATGATTTGTTAGTTTCCATTTCAGAACCAGTTCCCTTTGGTGATATAATTCTTGTTTAGAATAGTGTTTTCAAGAAGATTTGTTATTGCAATATGGTTACATGATGTTCTTGGTATTTAGTTCAGCTCATGGGACAATCCTAATGTCTTTAATCAGGATTGAAAATCCATCTATTTGAAATTGAAGATGTTTGCACCTTATTTGAGTGTGACAGTAGGTTCATGCATTATTCCATGGGACAGATTTTACTATTCATAGTCCTTGCAAATTTGGTTATAATTTGGTTATATTTCCAAGTATTGTCCAAGTAACAGATATAGTTCCTTGTTTACAGTAGTGTTTTCCGGAGTCTTTGCTACTGCACTGTGGTTACATGATGTTCTTGATATTTAGTTCATCACATGTGACAAGGCAAGGTTGACAATCCATCTATTTGTTTCTATTGTAAGGAATTAAATGCTCACAGGTCTGAATTTGCAATCACTAAAGTTGGAAATATATTGTGTAGTGGAAGCACGCAAAAGCAGACTTATGGATCGATTGCAAGGAAACCTATTTAATGACAAGTTATTTCATGTCATTAGGTTAATTTCAACAACTTGAAATGTGCCTTTCTTAATGTAA

Fln Alignment:

sp_v1.1_unigene5034___CGNLETLDLSHERNKELLLTGIEEVILCGIPRLLKNLKKISLP--TAF-DNVLLELGRFCPKLKELR----VEGFSCTVSRTMKEQA-------------VTDRGVIAIAGGCPELEVLSLSGCWKVTDSAIRALAFQCRQLKILHLTSCKNLTD
O49286______________CHELQDLDLSKSSK-------ITDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHLTRFCRKLKILNLCGCVEAVSDNTLQAIGENCNQLQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCSCVLITDESVVALANRCIHLRSLGLYYCRNITD

SNPs (tot: 72)

Position	A %	C %	G %	T %	Probability
503	83		16		0.994512
674		76	23		1.0
675	15			84	0.999986
676		84	15		0.999986
677	15			84	0.999986
683		7	15	76	0.999983
686		15	7	76	0.999983
688	15			76	0.999983
755			87	12	0.992554
756		87	12		0.992554
758	87		12		0.992554
759			87	12	0.992554
763	12			87	0.992554
765		12		87	0.992554
766		12	87		0.992554
768	87		12		0.992554
771	16		83		0.994512
772		16		83	0.994512
773	83	16			0.994512
774	83		16		0.994512
775	66	33			1.0
776	66	16	16		0.988813
777	33			66	1.0
778	16	83			0.994512
779		66	33		1.0
780	80		20		0.995493
783	20	80			0.995493
786		20		80	0.995493
1632			80	20	0.995493
1638		20	80		0.995493
1640			20	80	0.995493
1641		20	80		0.995493
1644	25			75	0.996473
1645	75		25		0.996473
1646	75		25		0.996473
1649	25	75			0.996473
1651			25	75	0.996473
1652	25		75		0.996473
1653		25		75	0.996473
1654			25	75	0.996473
1695	75	25			0.996473
1696	75	25			0.996473
2498			71	28	1.0
2501			28	71	1.0
2503			30	69	1.0
2504	30	69			1.0
2506	30	7	61		1.0
2507	7		30	61	1.0
2508		30	61	7	1.0
2511	33			66	1.0
2512		66	33		1.0
2516		33	66		1.0
2518		36	9		1.0
2534			14	85	0.993533
2535	14			85	0.993533
2536	85		14		0.993533
2540	14			85	0.993533
2543		14	85		0.993533
2546	85		14		0.993533
2549		14		85	0.993533
2550	14		85		0.993533
2552	14			85	0.993533
2553		14		85	0.993533
2554		14	85		0.993533
2555		16	83		0.994512
2557		16	83		0.994512
2558		16	83		0.994512
2559	16			83	0.994512
2565		20	80		0.995493
2566	80	20			0.995493
2567	80	20			0.995493
2570		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain