SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5019

Length: 1874 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5019

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein transporter, putative n=1 Tax=Ricinus communis RepID=B9S215_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	tom (target of myb1)-like protein	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	76%

Source	InterPros	Term	Type	Identity
Blast2go	VHS	IPR002014	-	76%
Blast2go	GAT	IPR004152	-	76%
Blast2go	ENTH/VHS	IPR008942	-	76%
Blast2go	Target of Myb protein 1	IPR014645	-	76%
Blast2go	VHS subgroup	IPR018205	-	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUS0

Fln msg:

Fln protein: MGDNNLMEKFNALGERLKVGGAEVSRKMSAGMSSMSGKMKELFQVQTQADKIVEEATSETLEEPDWALNLEICDMVNGERVSSQDLVRAVKKRIMQKTPRAQYLSLVLLETCVKNCEKVFSEIAAERILDEMVKMIDDPQTIVNNKEKALILIESWGESSEELRYLPVFEETYKSLKSRGIRFPGRDNESLAPIFTPPQTFPSGEQVNALPGVPPSDVSQMPTYRDVLVPQDNTLSEAHVKEVFDVARNSIELLSTVLTSSPQQDVLKDELTTTLVEQCRQSQSTIQRMVERAGDNEAMLFEALNVNDEIQHIISKFEEMMKAPTSQSAPEPAMIPVRVEEEESPRAAPEDALVRNRTTKPSNARSSTAEEDALADLDEMIFGKKGGTSEEHGPKKKKDDDLISF*

Protein Length: 407

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAATTTTTCCTCTGCCTTTCGCGAGCTGAAATTTGTTTGACGACTTCGAGCCCAATTCTGTCCTTTCAACCTTACACGGCCCCGATCTGCGAGCAGAACCAGAGTCTGGTCAACGTTTGAATTACTCGGAAAAACTAGTGGATATATGCCGAGTCGAAAGAACTTTTGGATAAATGTTTTTCTAGTGCAGTTTTCATTAGGGTTTGCAGACCCCTGAAAAACCTCTAAGAAGCTATAGCAATTCTGTAAATTAGCAGGGGAAAAGCATCTGTTTTTTTGGGTAAATTCTGGTTTGTTGTTGGAGTTGCTCAGGGAGAAATAACGGTAGCTTAGATCTTTTGCTTCCCTCTTATTGGGGTG_-_ATGGGGGACAATAATTTGATGGAGAAGTTCAACGCTTTGGGAGAGCGGTTGAAGGTAGGTGGAGCTGAAGTTAGCCGGAAAATGAGTGCGGGCATGAGCTCCATGAGTGGCAAAATGAAGGAGCTTTTCCAAGTTCAGACTCAGGCTGATAAAATTGTTGAAGAGGCCACATCAGAGACCCTGGAAGAGCCAGATTGGGCTCTGAATTTGGAGATTTGCGATATGGTCAACGGGGAGAGGGTTAGTAGCCAGGATCTTGTTCGTGCTGTCAAGAAAAGAATTATGCAGAAAACCCCCCGGGCTCAATACCTATCTCTAGTCTTGCTCGAGACTTGCGTTAAGAACTGTGAGAAGGTATTTTCCGAAATCGCAGCAGAGAGAATCCTTGATGAGATGGTGAAGATGATTGATGATCCGCAGACAATAGTGAATAACAAGGAGAAGGCTTTGATCCTCATTGAATCGTGGGGGGAATCCTCTGAGGAACTACGGTATTTGCCTGTGTTCGAGGAGACATACAAGAGCTTGAAATCCAGAGGAATAAGGTTTCCTGGACGAGATAATGAGAGTTTGGCCCCAATATTCACTCCTCCACAGACTTTTCCTAGTGGAGAACAAGTTAATGCGTTGCCTGGTGTACCACCTTCTGATGTTTCTCAGATGCCAACTTATCGAGATGTTCTTGTCCCTCAGGACAATACTTTATCTGAGGCTCATGTAAAAGAAGTGTTTGATGTTGCTCGTAATAGTATTGAACTACTTTCTACCGTGTTGACTTCTTCTCCACAGCAAGATGTATTGAAGGATGAACTAACTACTACATTGGTGGAGCAATGCCGGCAATCACAATCTACTATACAGAGGATGGTAGAGAGAGCTGGTGATAATGAGGCCATGCTTTTTGAGGCTTTAAATGTGAATGACGAGATCCAACATATAATTTCGAAGTTTGAAGAAATGATGAAGGCCCCAACATCTCAATCTGCACCTGAACCTGCAATGATACCTGTCCGTGTGGAAGAGGAAGAGTCGCCTCGAGCTGCTCCAGAAGATGCCCTTGTCAGGAACCGCACTACAAAGCCCTCAAATGCCCGGTCGTCTACTGCAGAAGAAGATGCATTGGCTGATTTAGATGAGATGATATTTGGTAAGAAAGGAGGTACATCTGAAGAACATGGTCCTAAAAAGAAAAAGGATGATGACCTAATTTCATTTTAG___GCCTTCTGCTATCCCATTCATTAACTATGATTGCTTCTAGCCTCTACTATATTGTACATTTAGATGGTTAGATTTCTTTTTTTAATTAAATCCAGTGTAGGATATATCTATTTGTCCATGATAACATTCTATTTTGAGGCAAGAATTGTTTAAACCTTTTTTCATTCTATCTCAAGATGGTTCAGTTTTTCTCCAGTCAAACATGAGTTGACTGATTTGTTAAAAACCTTAAATCCAATAAATGAGTATTCCTTGGAATGATATTAATTTAT

Fln Alignment:

sp_v1.1_unigene5019___MGDNNLMEKFNALGERLKVGGAEVSRXXXXXXXXXXXXXXELFQVQTQADKIVEEATSETLEEPDWALNLEICDMVNGERVSSQDLVRAVKKRIMQKTPRAQYLSLVLLETCVKNCEKVFSEIAAERILDEMVKMIDDPQTIVNNKEKALILIESWGESSEELRYLPVFEETYKSLKSRGIRFPGRDNESLAPIFTPPQTFPSGEQVNALPGVPPSDVSQMPTYRDVLVPQDNTLSEAHVKEVFDVARNSIELLSTVLTSSPQQDVLKDELTTTLVEQCRQSQSTIQRMVERAGDNEAMLFEALNVNDEIQHIISKFEEMMKAPTSQSAPEPAMIPVRVEEEESPRAAPEDALVRNRTTKPSNARSSTAEEDALADLDEMIFGKKGGTSEEHGPKKKKDDDLISF
A9NUS0______________MADNNLMEKFNALGERLKVGGAEVSRKMSAGMSSMSDKMKELFQVQTQADKIVEEATSENLEEPDWALNLEICDMVNGERVGSQDLVRAVKKRIMQKTPRAQYLSLVLLETCVKNCEKVFSEIAAERVLDEMVKMIDDPQTIVNNREKALILIESWGESSEELRYLPVFEETYKSLKSRGIRFPGRDNESLAPIFTPPQTFPSGEQVDALPGVPPSAGSQMQTYRDVLVPRDDTLSESHVKEVFDVARNSIELLSTVLTSSPQQDALKDELTTTLVEQCRQSQYTVQRMVERAGDNEALLFEALNVNDEIQHILSKFEEMTKAPTSQSVPEPAMIPVRVEEEESPRAPPEDALVRNRTTKPLNARSSTAEEDALADLDEMIFGKKGGTSEEHGSKKQKDDDLISF

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
227		40		60	1.0
791	25			75	0.996473
795			25	75	0.996473
889	10			90	0.90298
891		90	10		0.90298
893	90		10		0.90298
1152		90	10		0.90298
1263		85		14	0.993533
1290			85	14	0.993533
1293			14	85	0.993533
1294			14	85	0.993533
1505		6		93	0.999264
1507			93	6	0.999264
1512		6		93	0.999453
1515	93		6		0.999453
1517	93	6			0.999453
1520	93			6	0.999453
1521		6	93		0.999453
1677		10		90	0.90298
1678		90		10	0.90298

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain