SustainPineDB

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Assembly info
Unigenes
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5013

Length: 470 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene5013
CGGATGCAGATATCATGTGGTTTCGGAATCCATTTCTGCATTTTGAACCNGATGCAGATTTTCAAATTGCTTGTGACCATTTCACAGGCAGCCCTACGGATTTGAAGAACATGGCCAATGGGGGATTTAACTATGTAAAATCTAATAACCGGACAGTAGAATTCTACAGGTATTGGTACATGTCGCGAGAATTGTATCCTGGAAAACATGATCAAGATGTGCTAAATAATATCAAATATGAAGATGCTATAAGCGAAATAGGATTGAAGTTGAGGTTCTTGGACACATCTTATTTTGGTGGATTTTGTGAAGTAAGCAGGGATTTCAACAAGGTTTGCACCATGCATGCAAATTGCTGCTATGGACTGAGAAACAAGCTTCAGGATTTGAGGTTAATGCTGGCAGATTGGAAACATTTTCAGTCCATGACTTTCCAACAGAAGAGATTGGAGACACTGACCTGGAAAATT

Ace file of the UniGene sp_v1.1_unigene5013

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleotid_trans domain containing protein	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	protein	-	-	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Nucleotide-diphospho-sugar transferase	IPR005069	-	0.0	77%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLR9

Fln msg: STOP codon was not found. Distance to subject end: 9 aas, your sequence is shorter than subject: 156 - 422

Fln protein: DADIMWFRNPFLHFEPDADFQIACDHFTGSPTDLKNMANGGFNYVKSNNRTVEFYRYWYMSRELYPGKHDQDVLNNIKYEDAISEIGLKLRFLDTSYFGGFCEVSRDFNKVCTMHANCCYGLRNKLQDLRLMLADWKHFQSMTFQQKRLETLTWKI

Protein Length: 157

Fln nts: CGGATGCAGATATCATGTGGTTTCGGAATCCATTTCTGCATTTTGAACCaGATGCAGATTTTCAAATTGCTTGTGACCATTTCACAGGCAGCCCTACGGATTTGAAGAACATGGCCAATGGGGGATTTAACTATGTAAAATCTAATAACCGGACAGTAGAATTCTACAGGTATTGGTACATGTCGCGAGAATTGTATCCTGGAAAACATGATCAAGATGTGCTAAATAATATCAAATATGAAGATGCTATAAGCGAAATAGGATTGAAGTTGAGGTTCTTGGACACATCTTATTTTGGTGGATTTTGTGAAGTAAGCAGGGATTTCAACAAGGTTTGCACCATGCATGCAAATTGCTGCTATGGACTGAGAAACAAGCTTCAGGATTTGAGGTTAATGCTGGCAGATTGGAAACATTTTCAGTCCATGACTTTCCAACAGAAGAGATTGGAGACACTGACCTGGAAAATT

Fln Alignment:

sp_v1.1_unigene5013___DADIMWFRNPFLHFEPDADFQIACDHFTGSPTDLKNMANGGFNYVKSNNRTVEFYRYWYMSRELYPGKHDQDVLNNIKYEDAISEIGLKLRFLDTSYFGGFCEVSRDFNKVCTMHANCCYGLRNKLQDLRLMLADWKHFQSMTFQQKR
B8LLR9______________DADIMWLRNPFTRFSPDADIQIASDQYNGSPYDVHNMPNGGYKYVRSNERTVSFYRYWYLSRRLFPGQNEQDVLNIVKFTRGFSRRGMKFMFLSTQYFGGFCQRSEYLDDVCTMHANCCKGLKAKLTDLRQTLDDWSEYRNPPLNSTR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain