SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5004

Length: 1239 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5004

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LETM1 domain containing protein	-	-	5.0e-11	30%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	53%
Blast2go	unnamed protein product [Vitis vinifera]	-	-	0.0	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	0.0	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	LETM1-like	IPR011685	-	0.0	64%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7TH25

Fln msg: your sequence is shorter than subject: 366 - 910

Fln protein: FDKELQCVDEALNRLEGLLKEIHVCSSNSGKEHLEAACTDLERIRKLKKEAEFLEASWRAKAASVQQGIEDNYFQPPKAESSSQSKHRSGKLGQGNQNEKESKGPQGRSVENIPRGLRNFLLSHSNTKKGGDEDRAVTIGSIEDGALEQTIPIVEDAATVSNEIRRFEQLQHELVELERRFQENADGFRDQKGYYNNSDQVASSVLAIGAGYKLSKVEKEDNILRKSIGKLKEAGSDVWEGTRLLATDVAAAMGFLQRALTGDELTDKEKQLLRRTLTDLASVIPIGILMLLPVTAVGHAAILAAIKRYFPAMIPSAYARERLDLLRQLEKLQEMDVSASSSDEENVEMPKVQINAAGDAVGDEP*

Protein Length: 367

Fln nts: GTTTGATAAGGAATTGCAGTGTGTTGATGAGGCTCTCAACAGGTTAGAAGGATTGCTCAAGGAAATTCATGTTTGTAGCTCCAACTCAGGCAAGGAGCACTTAGAAGCAGCTTGTACAGACCTAGAAAGAATTCGAAAGTTGAAAAAAGAGGCAGAGTTTCTTGAAGCCTCTTGGAGAGCAAAGGCAGCATCAGTGCAGCAGGGCATTGAAGACAATTACTTCCAGCCCCCTAAGGCTGAAAGTaGTAGTCAATCTAAACACAGATCTGGCAAGTTAGGGCAGGGGAATCAAAACGAAAAGGAGAGTAAGGGACCTCAAGGAAGAAGTGTAGAGAATATTCCTCGGGGCTTGCGGAATTTTTTGTTATCCCATTCAAATACCAAAAAAGGCGGGGATGAAGATCGAGCAGTCACCATAGGTTCTATAGAAGATGGGGCATTAGAGCAGACTATTCCAATAGTAGAGGATGCAGCAACAGTTTCAAATGAGATTAGGCGATTTGAACAATTACAGCATGAGCTGGTTGAGCTTGAGAGACGATTTCAAGAAAATGCTGATGGATTTCGAGATCAAAAGGGGTATTACAATAATAGCGATCAAGTTGCCAGCAGCGTACTAGCAATAGGAGCAGGTTATAAATTATCTAAGGTGGAAAAGGAAGACAACATTCTGCGCAAGTCCATTGGAAAGTTGAAAGAAGCTGGCTCGGATGTCTGGGAAGGTACTCGGCTTCTTGCCACTGATGTGGCTGCTGCCATGGGCTTCCTACAAAGAGCCTTAACAGGTGATGAGCTGACTGACAAGGAAAAGCAACTTCTTCGGAGGACACTAACAGATTTAGCTTCAGTTATACCAATTGGAATCCTCATGCTCCTTCCGGTCACAGCTGTTGGACATGCCGCTATCTTAGCTGCAATAAAAAGATACTTCCCTGCTATGATACCCTCTGCATATGCACGTGAGAGGTTGGATTTATTGAGGCAGTTGGAGAAGTTGCAGGAAATGGATGTTAGTGCATCAAGCTCAGATGAAGAGAATGTAGAGATGCCCAAGGTGCAGATAAATGCTGCTGGTGATGCTGTTGGTGATGAACCATGA___TGTGTCAGAGCATGAGTTAAATAGACCGCCATAATCATTTTCTCACTGACAGACCTAGAAGGCAATGCTAATGGTCAATTTCAACTCAGATTATACCGTAAAGTAAACAATTCCGTGCCTTTGTAATCGATTGCAACATA

Fln Alignment:

sp_v1.1_unigene5004___FDKELQCVDEALNRLEGLLKEIHVCSSNSGKEHLEAACTDLERIRKLKKEAEFLEASWRAKAASVQQGIEDNYFQPPKAESSSQSKHRSGKLGQGNQNEKESKGPQGRSVENIPRGLRNFLLSHSNTKKGGDEDRAVTIGSIEDGALEQTIPIVEDAATVSNEIRRFEQLQHELVELERRFQENADGFRDQKGY--------YNNSDQVASSVLAIGAGYKLSKVEKEDNILRKSIGKLKEAGSDVWEGTRLLATDVAAAMGFLQRALTGDELTDKEKQLLRRTLTDLASVIPIGILMLLPVTAVGHAAILAAIKRYFPAMIPSAYARERLDLLRQLEKLQEMDVSASSSDEENVE
D7TH25______________FDKALESVDEALIRLEKLLQEQHVSKSNSGKEHLKAACSDLERIRKLKKEAEFLEVSFRAKAASLQQGGDDGHSQSSISEQGPYLKGKNRK----SANVMLDRANRGASN---PRGLWSFLLSRSTRKP---DPGSSSMDRAESEPFEQTTASVSVAESESNEIQRFELLRKELIELEKRVQRSTDQSENEEDVKVTVDNATYRDEDGVT----------QLVQVQKKENIIEKSFDKLKEASTDVWQGTQLLAIDVAAATGLIRRVLIGDELTEKEKKALQRTLTDLASVVPIGVLMLLPVTAVGHAAILAAIQRYVPALIPSTYGPERLDLLRQLEKMKEMETSELNT-EENVD

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
69	66		33		0.997452
245			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain