SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5002

Length: 1142 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5002

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	5PTASE11 (INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 11); hydrolase/ phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase/ phosphatidylinositol-3,5-bisphosphate 5-phosphatase/ phosphatidylinositol-4,5-bisphosphate 5-phosphatase	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	26%
Blast2go	protein	-	-	61%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoinositide 5-phosphatase.	EC:3.1.3.36	-	0.0	61%

Source	KEGGs	Term	Identity
Blast2go	Inositol phosphate metabolism	00562	61%
Blast2go	Metabolic pathways	01100	61%
Blast2go	Phosphatidylinositol signaling system	04070	61%

Source	GOs	Term	Type	Identity
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	61%
Blast2go	phosphatidylinositol dephosphorylation	GO:0046856	Biological Process	61%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	61%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	61%
Blast2go	phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	GO:0004439	Molecular Function	61%
Blast2go	phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	GO:0034485	Molecular Function	61%
Blast2go	phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity	GO:0043813	Molecular Function	61%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADM7

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 43 aas, putative chimeric sequence, your sequence is shorter than subject: 318 - 462

Fln protein: VVTLAVTHACDELHKLLGGKGESFDFYVIGLQEVPNLDAGSVILDALGRNYSLVATSVMLSLQLFIFARNASKPFIKEVRVDKVSLGGLGGVVRRQKGAVAITLIYKGCSFLFIDCHLSAHENNVLERNVQYQRICQTIFNKPKTSSFRQSPNQLMDLSGCRMADDDQDQSVSLHSASIRQSDVVVWLGDLNYRIEGSRKSVSLLIRQNLQKLLRAKDQLSREAEKGEIFHGFCEGPLSFRPTYKYDIGTDDYDTSAKERVPSWTDRILYRVSTSATNIKVHVQDYDSIETVKASDHRPVKALLKINLCNFTQPRIP*

Protein Length: 319

Fln nts: CGTCGTGACCTTGGCTGTCACTCACGCATGTGATGAGCTCCATAAGCTTCTGGGTGGAAAAGGGGAAAGCTTTGACTTTTACGTCATAGGACTTCAAGAAGTTCCCAACTTGGATGCCGGTTCTGTGATTCTGGATGCCTTGGGACGAAATTACAGCTTGGTTGCCACTTCTGTCATGCTGTCTTTGCAACTCTTCATATTTGCAAGAAACGCTTCAAAGCCTTTCATTAAAGAGGTGAGAGTGGATAAGGTTAGTTTGGGAGGCCTTGGAGGAGTCGTCAGGCGACAGAAGGGGGCCGTAGCAATAACCTTAATATACAAAGGCTGTTCATTTCTTTTCATTGACTGTCATCTCTCTGCTCATGAGAATAACGTGCTAGAGCGCAATGTTCAGTACCAGCGCATTTGCCAGACCATTTTCAACAAACCGAAGACGTCCAGCTTTAGGCAGAGCCCGAACCAATTAATGGATCTTTCAGGGTGCAGGATGGCAGATGATGATCAAGATCAAAGCGTTTCTCTGCATTCCGCTTCTATTCGCCAATCCGATGTGGTAGTCTGGCTGGGGGATCTCAACTACAGAATTGAAGGAAGCAGAAAGTCTGTGAGCCTCCTCATCCGCCAAAATCTACAAAAGCTTTTGAGAGCCAAAGACCAACTTTCAAGAGAAGCAGAAAAAGGGGAGATTTTCCATGGTTTCTGCGAAGGCCCGCTCTCTTTCAGACCCACCTACAAGTATGACATCGGAACAGACGACTATGACACAAGTGCTAAGGAAAGAGTCCCTTCCTGGACTGACAGAATCTTGTACAGAGTCAGTACATCTGCCACAAACATCAAAGTCCATGTGCAGGACTATGATTCGATTGAAACAGTAAAGGCCTCAGATCATAGACCCGTCAAAGCTCTTCTGAAGATCAATCTCTGCAACTTCACACAACCACGGATTCCTTAA___TTATGAATCCCAGTCCGTTGAGTTGAATTGAGTTTTCAATGTATTTATTCATTCATTATTAATGACAGCTGAGTTCCGCTTTGAATTTTAGTGGATATGTATTATAGATGCGAGCAAGAGTCAAACTATGGCCCCACGGGATTGTACACTTCCTTTGAATTTTTTATTCCTAATAATATTTTGTACA

Fln Alignment:

sp_v1.1_unigene5002___CDELHKLLGGKGESFDFYVIGLQEVPN-------------------------LDAGSVILDALGRNYSLVATSVMLSLQLFIFARNASKPFIKEVRVDKVSXXXXXXXXXXQKGAVAITLIYKGCSFLFIDCHLSAHENNVLERNVQYQRICQTIFNKPKTSSFR-------QSPNQLMDLSGCRMADDDQDQSVSLHSAS------IRQSDVVVWLGDLNYRIEGSR--KSVSLLIRQNLQKLLRAKDQLSREAEKGEIFHGFCEGPLSFRPTYKYD---IGTDDYDTSAKERVPSWTDRILYRVSTSATN--------IKVHVQDYDSIETVKASDHRPVKALLKINL
D5ADM7______________CDSLISWLASPASEACIVVIGLQEMEMGAGFLAMAAAKETVGIEGSANGQWWLDTIGKILDE-GMTFERAGSRQLAGLLVAVWVRKDLCPYIGEVDVGAVACGLGRTIG--NKGAVALKMRVFRRILCVINCHFAAHADAVARRNADFEYVYRNLTFIPMTAGVNTVAAGVSSAVQRFKNLNVRRGADLEAEKDIPVAGVASEVLPELAEADMLIWFGDFNYRLDDISYDEARNYIACKHFDTILR-KDQLRGEMKAGHVFQGMREANIKFPPTYKFDRGQVGLQGYDSSEKKRVPAWCDRVIFRDSRNGRSTQCKLTCPVVASVIRYDACMDVKDSDHKPVRCMFSVDI

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
596	85			14	0.993533
598	85		14		0.993533
599	85	14			0.993533
600	85			14	0.993533
604	14			85	0.993533
605		14	85		0.993533
607		14	85		0.993533
670	66	33			1.0
674	66		11		0.999999
675			88	11	0.923564
676	62		12	25	1.0
677	75		25		1.0
678	87	12			0.992554
679	62	37			1.0
680	62	25		12	1.0
681			62	37	1.0
682			75	25	1.0
684		12	87		0.992554
685	62	25		12	1.0
686			75	25	1.0
687	62		25	12	1.0
688		12		87	0.992554
689	12	25		62	1.0
690	25	12		62	1.0
691		25		75	1.0
692		75		25	1.0
693	12	87			0.992554
717		88	11		0.923564
718	11			88	0.923564
720		11		88	0.923564
723		88	11		0.923564
724	88		11		0.923564
725		11	88		0.923564
726	88			11	0.923564
727		88	11		0.923564
728		88		11	0.923564
734	88	11			0.923564
735	11	88			0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain