SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4998

Length: 1075 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene4998 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding/protein serine/threonine kinase n=2 Tax=Glycine max RepID=C6FF68_SOYBN	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	protein	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	phloem transport	GO:0010233	Biological Process	82%
Blast2go	leaf vascular tissue pattern formation	GO:0010305	Biological Process	82%
Blast2go	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	82%
Blast2go	auxin mediated signaling pathway	GO:0009734	Biological Process	82%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	82%
Blast2go	identical protein binding	GO:0042802	Molecular Function	82%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	82%
Blast2go	Protein kinase-like domain	IPR011009	-	82%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	82%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPH3

Fln msg: Overlapping hits, possible frame ERROR between 226 and 217, your sequence is shorter than subject: 251 - 360

Fln protein: RGIREFMAEMETLGKIKHRNLVPLLGYCKVGEERLLVYEYMQFGSLEDMLHGEKGGFKTRLTWEVRKQIAKxxxxxLAFLHHNCIPHIIHRDMKSSNVLLDRNMEARVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVLLLEILTRKRPTDKEEFGDSNLVGWVKLHLNQGKAMEVIDPDLKGMGPDSEFIRYLQITMQCLEDFPSRRPSMLQVVSMFKEFHVQTTSGGGG*

Protein Length: 252

Fln nts: AAGGGGTATTAGAGAATTCATGGCAGAAATGGAGACGCTAGGCAAGATCAAGCACAGGAACCTGGTCCCCCTGTTGGGCTACTGCAAAGTTGGGGAGGAGAGGCTCTTGGTCTATGAATATATGCAATTCGGGAGCCTGGAAGACATGCTTCACGGGGAAAAGGGTGGATTTAAGACCCGGCTCACCTGGGAAGTGAGAAAACAGATTGCCAAAxxxxxxxxxxxxxxxTTAGCATTCCTACACCATAATTGCATTCCTCACATAATTCACAGGGACATGAAATCCAGCAATGTACTTCTTGATAGAAACATGGAAGCCAGAGTTTCGGACTTTGGAATGGCAAGGCTCATCAGTGCACTGGACACCCACTTGAGTGTGAGCACTCTGGCTGGGACTCCTGGTTATGTCCCTCCTGAATATTACCAGAGCTTCAGATGTACTGCAAAAGGGGATGTTTACTCATTTGGAGTCCTTTTGCTTGAAATACTTACTAGAAAGAGGCCTACTGACAAGGAAGAATTTGGAGACAGCAATCTGGTTGGGTGGGTGAAGCTCCATCTCAATCAAGGAAAGGCCATGGAAGTCATAGATCCAGACTTGAAGGGCATGGGTCCAGATTCTGAGTTTATACGCTATCTCCAAATTACGATGCAATGCCTGGAAGATTTTCCCTCCAGAAGGCCTAGCATGCTTCAAGTAGTCTCCATGTTCAAAGAGTTTCATGTTCAAACTACCAGTGGAGGTGGAGGGTGAGCTTATATGTTGCTTTCTCCTTCTTGTTCTCCACTGTTTGAGAGGCACTAAAAGTATTTAACTGAGTCTCATATAATTGCAATGTCCCTGTTTATTCAGGTTGTTTGTATATTTGTAATTGCAGCTAGAAATGTTAGGGGTCACAGTATTATTGGCACTGGCTTCAGTGCTGGATTTTATTTTCACATTGTTGGTGGATCTGTTTAGGTTAAAAGAAAGAAGTTAACTTGATTTCCTGGAGGTCTATTCCTTCCTGACAAGATCATATTTGTATATAACCATTCTAGGAATCCAATAAAGAATTTTTCTGACGGAAGAAAGC

Fln Alignment:

sp_v1.1_unigene4998___REFMAEMETLGKIKHRNLVPLLGYCKVGEERLLVYEYMQFGSLEDMLHGEKGGFKTRLTWEVRKQIAKGxxxGLAFLHHNCIPHIIHRDMKSSNVLLDRNMEARVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVLLLEILTRKRPTDKEEFGD--SNLVGWVKLHLNQGKAMEVIDPDLKGMGPDSEFIRYLQITMQCLEDFPSRRPSMLQVVSMFKEFHVQTTS
B8LPH3______________RGFERELDAMGDIKHRNVVTLRGYYSSSHVNLLVYDLMQNGSLDGILHSRSPN-KVSLDWAARNKIALGxxxGIAYLHHDCIPHIIHRDIKSSNILLDEEMEARISDFGLATLINPDQTHVS-TIVAGTFGYLAPEYVETGRATEKGDVYSYGVVLLELITGKRPTD-EAFVEKGNNIVTWIRALVEDGCEEHAFDPDLVDVLTRREMKEAFIVAYNCLNQNPSERPTMAQVVKMLEEIKLDASS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain