SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4989

Length: 2423 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene4989
CGTCGTGACCTTGGCTGTCACTCATCTTTTTTGATTTTCGTTCCTTCGCACAAAGAAATCCAGGAACAGCATCGCTTCAATTTGAATCAAACAGAGTGCTCTGTTCGTCATTCATTTAAGATATTCGGCAGATAGCTGAAGCGTCGTGACCTTTTTGTCACCATTTTTTTTGGAGCAAATTGTATTTGGATATATTTGTGTGCATCAGCAATTTGCATGCAGATTTACTGATAATTTGTGATTATTGAAGCCTTGAATTTTCGAGATATGCAGATCCCTTGTCATTCTAGCACTCATTTCAAGGAATAATTTCTGCATGAGTTTGATAAGAGTTCAACTATATTAACTTGGACTGGATGGTGTCCTGCATGAGTTACACTTGTTTTTTTCTTACTATTTTTTCCCTTCAATAGATGAACATGATTACAGGCTCCGCTCTGGTCCGTTGTTGAGAAAATAGATTTATTTGCATTTTGGCACGGTTGATGGTTGTTTAGAATCACGACTGCTGGAAGCTGAGGCCGTGCTGTGTATCCGTCTCAGCTTCTAGTGGAAATTAGTCAAAGAGTGTTTGGATTGGACTGAAGGAGATTAACACGAAGTAAAGAGTTACCGGCAAAGGTGATCTGAAAACAGATCAATTCTATTTGTATATTCCAAGGATTTCTTCCAGCAATGATTCTAACAATGGGGAACGACTCAGAATCCGTCTTTAAAATGCTGAAGTTTGCAGTCTTACCCATTGCAAAGGTGTTTGTGATGTGTTTCCTTGGGTTCGTCATGGCTACGAAGTACGTCAACATATTAACTCCCAGCAATCGCAAGCTTCTCAACGGGCTTGTTTTTACTTTATTTCTACCATGTCTGATTTTCACACAACTGGGAAGAGCTGTGACTCTACAAAAGATGATTGAATGGTGGTTCATTCCTGTCAACGTTGTGCTTGCTGCCATATCGGGCTCAGTAATAGGTTTTATTGTTGCATCAATTGTTCGGCCACCTAAGAATTACTTCAAGTTTACCGTTGTACAAATTGGAATTGGAAATATTGGCAATGTACCGCTTGTTTTGATTAGTGCTTTGTGTCAAGACAGAACAAATCCTTTTGGTGATTCCAAAACTTGCAATCAAATGGGTAGTGCGTACATATCATTCGGCCAATGGGTTGGTGCAGTCATTCTTTACACTTATGTATTCTCTATGCTTTCTCCTCCTGAAGATTCAGCAAAGGGAGACCTTGAATCTGCATCCACAGGAGTGAAAAATAGGCTTGACAATCCAGGCAGTGCAAAGTTTCCATTGCTGGCATCAGAAGAGTTGCTTTCTGATTCTTCATCAACATCAGTGGATTGGCGTTCAAAGGCAAGGAAGATAGGTGACGGTATATCTTCCCTTGTTGATCGATTCAAGCTTAAGCAAATAATGCAACCACCTATTTTAGCTTCTATCCTTGCAATGATAATTGGTGTTGTACCATTTTTAAAGCACCTCATCATGACGGATGATGCGCCTCTTTTTTTTATCACTGACAGCTGTGTCATCCTTGGAGGAGCTATGATTCCATCTATAATGCTGGCTCTAGGTGGCAACCTTGTGGGTGGTCCTGGAAACTCTAAGCTAGGATTTAAAACGACAGTAGCCATTATATTTGGTCGATTGTTCTTGGTGCCTCCAGCTGGTCTTGGTATTGTTACTTTGGCTGACAAATTGGGTTTTCTCCCTCCCAATGACAAAATGTTTCGGTTTGTTCTCCTCCTCCAACACACAATGCCCACGTCTGTTCTTGCAGGGGCTGTTGCTAATTTAAGAGGCTTCGCAGAAATGGAAGCATCGGCAATTCTATTTTGGATCCACGTTTGTGCAGTTTTTTCCATGGCTATCTGGATAATTTTGTATCTTCATTTGTTATTTTAATTAAGCAGCTGTGCAACTTAATTCTTTTAGCGTCGAGTACATGTTTTTCTCATCGTCAGCCGAACTTTGCTAATTCTAATCATCCTCGATGACCATTTGTCAGCATGAGACAAAGAAGGAAAGCTTCCATGCAAACACCAATATTAGGGACCGTTCTGCAGCAACTCCATAAGTTTTCTCTTCTCTTCCGTTTGTGATAATAGTCATATCTGGGTTGTAATAAGCATTATTGTTGTCATTGGCATCGTATTATTCAACTGTAAGCTGATCTGTGACGGAGCTTGGATACTGTCCAGCAGCAAATCTGTCATTTTCCAAATTTGGTGTCTTTAAACATTTTTTAAATATCCGCTCTTAGTTTTGCCTTTTCAAGAGTGCCTGATAATTCTTCAAATGAATTTTTGGAAATATGGCCATGGGCTTGGCCTGGAAACAATGGTTATAGAAGTAATAAAGGAACAACTGTGATATCTCGGTAAATCTTATGATGATGTATATGTTTTCTTTTC

Ace file of the UniGene sp_v1.1_unigene4989 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Auxin efflux carrier component, auxin transport protein n=2 Tax=Populus trichocarpa RepID=B9IGX9_POPTR	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	auxin efflux carrier auxin transport protein	-	-	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Auxin efflux carrier	IPR004776	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PTN6

Fln msg: your sequence is shorter than subject: 413 - 452

Fln protein: MILTMGNDSESVFKMLKFAVLPIAKVFVMCFLGFVMATKYVNILTPSNRKLLNGLVFTLFLPCLIFTQLGRAVTLQKMIEWWFIPVNVVLAAISGSVIGFIVASIVRPPKNYFKFTVVQIGIGNIGNVPLVLISALCQDRTNPFGDSKTCNQMGSAYISFGQWVGAVILYTYVFSMLSPPEDSAKGDLESASTGVKNRLDNPGSAKFPLLASEELLSDSSSTSVDWRSKARKIGDGISSLVDRFKLKQIMQPPILASILAMIIGVVPFLKHLIMTDDAPLFFITDSCVILGGAMIPSIMLALGGNLVGGPGNSKLGFKTTVAIIFGRLFLVPPAGLGIVTLADKLGFLPPNDKMFRFVLLLQHTMPTSVLAGAVANLRGFAEMEASAILFWIHVCAVFSMAIWIILYLHLLF*

Protein Length: 414

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTTTTTGATTTTCGTTCCTTCGCACAAAGAAATCCAGGAACAGCATCGCTTCAATTTGAATCAAACAGAGTGCTCTGTTCGTCATTCATTTAAGATATTCGGCAGATAGCTGAAGCGTCGTGACCTTTTTGTCACCATTTTTTTTGGAGCAAATTGTATTTGGATATATTTGTGTGCATCAGCAATTTGCATGCAGATTTACTGATAATTTGTGATTATTGAAGCCTTGAATTTTCGAGATATGCAGATCCCTTGTCATTCTAGCACTCATTTCAAGGAATAATTTCTGCATGAGTTTGATAAGAGTTCAACTATATTAACTTGGACTGGATGGTGTCCTGCATGAGTTACACTTGTTTTTTTCTTACTATTTTTTCCCTTCAATAGATGAACATGATTACAGGCTCCGCTCTGGTCCGTTGTTGAGAAAATAGATTTATTTGCATTTTGGCACGGTTGATGGTTGTTTAGAATCACGACTGCTGGAAGCTGAGGCCGTGCTGTGTATCCGTCTCAGCTTCTAGTGGAAATTAGTCAAAGAGTGTTTGGATTGGACTGAAGGAGATTAACACGAAGTAAAGAGTTACCGGCAAAGGTGATCTGAAAACAGATCAATTCTATTTGTATATTCCAAGGATTTCTTCCAGCA_-_ATGATTCTAACAATGGGGAACGACTCAGAATCCGTCTTTAAAATGCTGAAGTTTGCAGTCTTACCCATTGCAAAGGTGTTTGTGATGTGTTTCCTTGGGTTCGTCATGGCTACGAAGTACGTCAACATATTAACTCCCAGCAATCGCAAGCTTCTCAACGGGCTTGTTTTTACTTTATTTCTACCATGTCTGATTTTCACACAACTGGGAAGAGCTGTGACTCTACAAAAGATGATTGAATGGTGGTTCATTCCTGTCAACGTTGTGCTTGCTGCCATATCGGGCTCAGTAATAGGTTTTATTGTTGCATCAATTGTTCGGCCACCTAAGAATTACTTCAAGTTTACCGTTGTACAAATTGGAATTGGAAATATTGGCAATGTACCGCTTGTTTTGATTAGTGCTTTGTGTCAAGACAGAACAAATCCTTTTGGTGATTCCAAAACTTGCAATCAAATGGGTAGTGCGTACATATCATTCGGCCAATGGGTTGGTGCAGTCATTCTTTACACTTATGTATTCTCTATGCTTTCTCCTCCTGAAGATTCAGCAAAGGGAGACCTTGAATCTGCATCCACAGGAGTGAAAAATAGGCTTGACAATCCAGGCAGTGCAAAGTTTCCATTGCTGGCATCAGAAGAGTTGCTTTCTGATTCTTCATCAACATCAGTGGATTGGCGTTCAAAGGCAAGGAAGATAGGTGACGGTATATCTTCCCTTGTTGATCGATTCAAGCTTAAGCAAATAATGCAACCACCTATTTTAGCTTCTATCCTTGCAATGATAATTGGTGTTGTACCATTTTTAAAGCACCTCATCATGACGGATGATGCGCCTCTTTTTTTTATCACTGACAGCTGTGTCATCCTTGGAGGAGCTATGATTCCATCTATAATGCTGGCTCTAGGTGGCAACCTTGTGGGTGGTCCTGGAAACTCTAAGCTAGGATTTAAAACGACAGTAGCCATTATATTTGGTCGATTGTTCTTGGTGCCTCCAGCTGGTCTTGGTATTGTTACTTTGGCTGACAAATTGGGTTTTCTCCCTCCCAATGACAAAATGTTTCGGTTTGTTCTCCTCCTCCAACACACAATGCCCACGTCTGTTCTTGCAGGGGCTGTTGCTAATTTAAGAGGCTTCGCAGAAATGGAAGCATCGGCAATTCTATTTTGGATCCACGTTTGTGCAGTTTTTTCCATGGCTATCTGGATAATTTTGTATCTTCATTTGTTATTTTAA___TTAAGCAGCTGTGCAACTTAATTCTTTTAGCGTCGAGTACATGTTTTTCTCATCGTCAGCCGAACTTTGCTAATTCTAATCATCCTCGATGACCATTTGTCAGCATGAGACAAAGAAGGAAAGCTTCCATGCAAACACCAATATTAGGGACCGTTCTGCAGCAACTCCATAAGTTTTCTCTTCTCTTCCGTTTGTGATAATAGTCATATCTGGGTTGTAATAAGCATTATTGTTGTCATTGGCATCGTATTATTCAACTGTAAGCTGATCTGTGACGGAGCTTGGATACTGTCCAGCAGCAAATCTGTCATTTTCCAAATTTGGTGTCTTTAAACATTTTTTAAATATCCGCTCTTAGTTTTGCCTTTTCAAGAGTGCCTGATAATTCTTCAAATGAATTTTTGGAAATATGGCCATGGGCTTGGCCTGGAAACAATGGTTATAGAAGTAATAAAGGAACAACTGTGATATCTCGGTAAATCTTATGATGATGTATATGTTTTCTTTTC

Fln Alignment:

sp_v1.1_unigene4989___TMGNDSESVFKMLKFAVLPIAKVFVMCFLGFVMATKYVNILTPSNRKLLNGLVFTLFLPCLIFTQLGRAVTLQKMIEWWFIPVNVVLAAISGSVIGFIVASIVRPPKNYFKFTVVQIGIGNIGNVPLVLISALCQDRTNPFGDSKTCNQMGSAYISFGQWVGAVILYTYVFSMLSP--------PEDSA--KGDLESASTGVKNRLDNPGS-------AKFPXXXXXXXXXXXXXXS----VDWRSKARKIGDG----------------ISSLVDRFKLKQIMQPPILASILAMIIGVVPFLKHLIMTDDAPLFFITDSCVILGGAMIPSIMLALGGNLVGGPGNSKLGFKTTVAIIFGRLFLVPPAGLGIVTLADKLGFLPPNDKMFRFVLLLQHTMPTSVLAGAVANLRGFAEMEASAILFWIHVCAVFSMAIWIILYLHL
C0PTN6______________SVGNEIVGGHQNLLSSVVPLLKLLCLSSIGLVLAHPKINLISKETFKLLSKLVFALFLPCLIFTELGKSVTLKNMREWWFIPANVILSTAIGCILGYLVALICRPPPQYFRFTVVMTGFGNTGNLPLAIVGSICHSSDQPFGQH--CNTTGVAYISFAQWVAVILVYTFVYHMLEPPEEFYEIVPEDSEIEREPIGDASRPLLFEAEWPGMHHKETEHCKTPFIARIFRSMSGSTEPNLSELDHYVEGNIEGGGSPKSVRCLNEPKVVRKIRIVAERTPIQHILQPPTIASLLAIIVGMVPQLRSVLFDEDAPLSFFTDSLEIVAAAMVPSVMLVLGGLLAEGPDKSELGMRTTIGIIFTRLLLLPLVGIGVVALAGKLDIIVSGDKMFVFVLLLQYTTPSAILLGAMTNLRGYGTKETSALLFWQHIFAVVSLSFYVTIYFKL

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
913	12		87		0.992554
993	10		90		0.90298
1152	12			87	0.992554
1241	11		88		0.923564
1451	84		15		0.999986
1453	84		15		0.999986
1454	84			15	0.999986
1455		84	15		0.999986
1456	15	84			0.999986
1457		15		84	0.999986
1459			20	80	0.999996
1460		20		80	0.999996
1461	80	20			0.999996
1462	20	80			0.999996
1463	18			81	0.999994
1465	81		18		0.999994
1466			81	18	0.999994
1468	18	81			0.999994
1472		18		81	0.999994
1473	81		18		0.999994
1490	15		84		0.999986
1576	90	10			0.90298
1577	90	10			0.90298
1578	10		90		0.90298
1636		11		88	0.923564
1855	83	16			0.999991
1996		85		14	0.993533
2094		85		14	0.993533
2095			14	85	0.993533
2096	14	85			0.993533
2097			14	85	0.993533
2099	85		14		0.993533
2100	14			85	0.993533
2103	85		14		0.993533
2104	85	14			0.993533
2106	14			85	0.993533
2109			14	85	0.993533
2115	85	14			0.993533
2116	85		14		0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain