SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4982

Length: 2507 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene4982
CGTCGTGACCTTGGCTGTCACTCAAAATTGCAAATTGTGGAGGCCCACTCCTCTGGGCAACAAGCTGACTAACCCATTCGAGACATGCCATGTCTGCACAGGTTTCCTCTTTCTATTTTTATTTGAAATAAAGCAAAAGTTGAATGGGGATCGCAACGGCACCGGCAACGGCAGGGGCACCAGTGGTCCGTACCCCAGCCCGCCAATGCTTACATTGGCTGATGATCGTCGCGCAGGCGATTAGGGCAATCCGTAAAATCTTAGAAAAAAAAAATAAGAAAATTCCCTGGGGTTTGATACTTAGTATAAATACTGTTGTTTAAGTGTTTCATACTACCAGGCAGCAGAAGGACACGAGTAGGTGGAGCAGGAGTTGAAAAGCTGTTGCAGGACGAGGTAGGTTCGATTGGTCTCCCAGCTGCCTTACCGCGATTCGAACTCCGGACGACAAATCACCTTCCTCACTTGGAACGAGCTCTATCTTGCTCTGTGGCCTTTTGCAATTGCGGGATAAATGGCTGTTCAACAAGGCATAGCTCTGGTTCCTAATCCACAAATGGTTGGGAATGCCTTTGTGGCCCAGTATTACAATGTTCTCCGTACTTCTCCTCAAATGGTACACAAATTTTACCAGGAATGCAGCTTACTTGGGCGGCCAGATGCAAATGGTCAAATGATCACGATAACTACTATGGAGGGTATCAATCAGCAGATTATGTCTCTGGACTACAGTGGGTTCAAGGCTGTGATAAAGACAGTTGATTCGCAAGAGTCTTATAACAATGGAGTACTGGTTCTAGTAACTGGGTCACTTACCTTTAAAAACAGTGGAGCACGCACGTTCACACAGTCCTTTTTCCTCGCTCCTCAGGAAAAGGGGTACTTTGTATTGAATGATATCTTTGTGTACGTCGATGAAGAACCAGAACAACAAAAGCAAAACCTTGCGTTGATAAATGGCTATGCAGACCATGCAACTGAAGTACCTGTCCTAGAGCCAGTTGTCGGGTCTGAACCAGTAGCTGAGAATGGTGTGATTGAGCCATCCATGACAGTGGTGGAGGAGCTTGTTGTTGAGGAGGAACATAATCACATGCAGGAGAGGGAAGTCACAGACGGTTCAGCTGACAAGAAAGAATCAGCAATTGACCATCTTCCTGCTACAGTTCACGATGAGGGGCCACCTGCTCGTGAAACTTCAGTTGTAATCCAAGTTGCACCCAAAAAGTCTTATGCTTCAATTGTTAAAGTAATGAAAGAAAATGCGGCTCTTATTGTTGCAGTTCAGAAACCATCTCTTGCGAAGGCGGTACCAAGCGCTGAGCGTCAAGCAACTTATTCCAGTCCACCTAAGGCATCTGCAAATGAGTCCTTGAGTTCCACTGCTGTCGATATGACAGATAACAGTGCTTCCCCTGAAGCAGAAGGAAATGCGTGCTCTATTTATATCAAGCACTTGCCTGTGAATGTTACCCCTGCTCAAGTTGAGGAAGAATTCAAGAAGTTTGGGGCAATTAAGCCAAATGGGGTTCAAGTTAGGAGTAAGCAAGGAGGATTCTGTTTTGGTTTTGTTGAATTTGAAGAAGCAGCTTCAGTCCAAACTGCACTTCAGGCATCTCCAATTACAATTAATGGGCGGCAAGCATTTGTTGAGGAGAAGAAGACCACATCTAGCACTAGAGCCACTCGTGGACGGCCTTTTCCTTCTAGAGGGGGCTTCAGAAATGATGGAATAAGGGTACGTGGAGCCTATGCTGGTCGGGGAAATGGAAGAACTGATTTTGCGAATGGGGCATATGGTGGTCGGGGAAATGGAAGAGCTGATTTTGTGAACAGGGCCGATCTGGGAAACAGAGCTCGAGGTTCTTTATCTGGGCGTGCTGTTTGGTTTCCTGATGCTCCCGAAGGATACCAAAGGGATCACATTCGAAATGTTGGGAGAGGCACTCAGCGAGGTGGGATGATGGCAAGCAATGGGCCCAGGATGGGATCTGTTGCTGCATGACATCTAGGACAACAACTTGGTTGACTTGTTTGTCTAGACTTGGGTTGTTCATTAAAACCATTCAGGAGCTTAAAGTTCAATTTTGATAGAAATGTTATATTCTTTTAAGCAATCTTCCATGGGGGGGTTGAATAACCAATAGTTTGGCAGGCTTTCATAAATGCAAACCATTTTGGATCAGATTTTCTGATTTTTTTATCGGATTTGTTCAAATTAATAGTAGAAACTGTGAGGAGGTGGCCATTCATTGCCTCTTAGAGTCTGCTACTGAAAAGCAGCGATGAGTTTAGAAACTACACGTTATTTGCAGCTGGAAGTACAGCCGTTTTTGTAAAAAATTATAAGCTGTTAGAGTCTCTAAAATAATTTTTGTTAGGGTTACTTTTTCCTGTAATTTAGTTGGTTTCAAACTTTCAGATGTCCATCAGCTTAGTTTCTTGGAGAGTTGTGTTTATTTGACATTTATGTCTTTACTAATAATAATGGTTTCCATCATTGCAAC

Ace file of the UniGene sp_v1.1_unigene4982

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA binding protein, putative	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	rna binding	-	-	58%

Source	InterPros	Term	Type	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	58%
Blast2go	Nuclear transport factor 2	IPR002075	-	58%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	58%
Blast2go	Nuclear transport factor 2, Eukaryote	IPR018222	-	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AB67

Fln msg: your sequence is longer than subject: 497 - 304

Fln protein: MAVQQGIALVPNPQMVGNAFVAQYYNVLRTSPQMVHKFYQECSLLGRPDANGQMITITTMEGINQQIMSLDYSGFKAVIKTVDSQESYNNGVLVLVTGSLTFKNSGARTFTQSFFLAPQEKGYFVLNDIFVYVDEEPEQQKQNLALINGYADHATEVPVLEPVVGSEPVAENGVIEPSMTVVEELVVEEEHNHMQEREVTDGSADKKESAIDHLPATVHDEGPPARETSVVIQVAPKKSYASIVKVMKENAALIVAVQKPSLAKAVPSAERQATYSSPPKASANESLSSTAVDMTDNSASPEAEGNACSIYIKHLPVNVTPAQVEEEFKKFGAIKPNGVQVRSKQGGFCFGFVEFEEAASVQTALQASPITINGRQAFVEEKKTTSSTRATRGRPFPSRGGFRNDGIRVRGAYAGRGNGRTDFANGAYGGRGNGRADFVNRADLGNRARGSLSGRAVWFPDAPEGYQRDHIRNVGRGTQRGGMMASNGPRMGSVAA*

Protein Length: 498

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAATTGCAAATTGTGGAGGCCCACTCCTCTGGGCAACAAGCTGACTAACCCATTCGAGACATGCCATGTCTGCACAGGTTTCCTCTTTCTATTTTTATTTGAAATAAAGCAAAAGTTGAATGGGGATCGCAACGGCACCGGCAACGGCAGGGGCACCAGTGGTCCGTACCCCAGCCCGCCAATGCTTACATTGGCTGATGATCGTCGCGCAGGCGATTAGGGCAATCCGTAAAATCTTAGAAAAAAAAAATAAGAAAATTCCCTGGGGTTTGATACTTAGTATAAATACTGTTGTTTAAGTGTTTCATACTACCAGGCAGCAGAAGGACACGAGTAGGTGGAGCAGGAGTTGAAAAGCTGTTGCAGGACGAGGTAGGTTCGATTGGTCTCCCAGCTGCCTTACCGCGATTCGAACTCCGGACGACAAATCACCTTCCTCACTTGGAACGAGCTCTATCTTGCTCTGTGGCCTTTTGCAATTGCGGGATAA_-_ATGGCTGTTCAACAAGGCATAGCTCTGGTTCCTAATCCACAAATGGTTGGGAATGCCTTTGTGGCCCAGTATTACAATGTTCTCCGTACTTCTCCTCAAATGGTACACAAATTTTACCAGGAATGCAGCTTACTTGGGCGGCCAGATGCAAATGGTCAAATGATCACGATAACTACTATGGAGGGTATCAATCAGCAGATTATGTCTCTGGACTACAGTGGGTTCAAGGCTGTGATAAAGACAGTTGATTCGCAAGAGTCTTATAACAATGGAGTACTGGTTCTAGTAACTGGGTCACTTACCTTTAAAAACAGTGGAGCACGCACGTTCACACAGTCCTTTTTCCTCGCTCCTCAGGAAAAGGGGTACTTTGTATTGAATGATATCTTTGTGTACGTCGATGAAGAACCAGAACAACAAAAGCAAAACCTTGCGTTGATAAATGGCTATGCAGACCATGCAACTGAAGTACCTGTCCTAGAGCCAGTTGTCGGGTCTGAACCAGTAGCTGAGAATGGTGTGATTGAGCCATCCATGACAGTGGTGGAGGAGCTTGTTGTTGAGGAGGAACATAATCACATGCAGGAGAGGGAAGTCACAGACGGTTCAGCTGACAAGAAAGAATCAGCAATTGACCATCTTCCTGCTACAGTTCACGATGAGGGGCCACCTGCTCGTGAAACTTCAGTTGTAATCCAAGTTGCACCCAAAAAGTCTTATGCTTCAATTGTTAAAGTAATGAAAGAAAATGCGGCTCTTATTGTTGCAGTTCAGAAACCATCTCTTGCGAAGGCGGTACCAAGCGCTGAGCGTCAAGCAACTTATTCCAGTCCACCTAAGGCATCTGCAAATGAGTCCTTGAGTTCCACTGCTGTCGATATGACAGATAACAGTGCTTCCCCTGAAGCAGAAGGAAATGCGTGCTCTATTTATATCAAGCACTTGCCTGTGAATGTTACCCCTGCTCAAGTTGAGGAAGAATTCAAGAAGTTTGGGGCAATTAAGCCAAATGGGGTTCAAGTTAGGAGTAAGCAAGGAGGATTCTGTTTTGGTTTTGTTGAATTTGAAGAAGCAGCTTCAGTCCAAACTGCACTTCAGGCATCTCCAATTACAATTAATGGGCGGCAAGCATTTGTTGAGGAGAAGAAGACCACATCTAGCACTAGAGCCACTCGTGGACGGCCTTTTCCTTCTAGAGGGGGCTTCAGAAATGATGGAATAAGGGTACGTGGAGCCTATGCTGGTCGGGGAAATGGAAGAACTGATTTTGCGAATGGGGCATATGGTGGTCGGGGAAATGGAAGAGCTGATTTTGTGAACAGGGCCGATCTGGGAAACAGAGCTCGAGGTTCTTTATCTGGGCGTGCTGTTTGGTTTCCTGATGCTCCCGAAGGATACCAAAGGGATCACATTCGAAATGTTGGGAGAGGCACTCAGCGAGGTGGGATGATGGCAAGCAATGGGCCCAGGATGGGATCTGTTGCTGCATGA___CATCTAGGACAACAACTTGGTTGACTTGTTTGTCTAGACTTGGGTTGTTCATTAAAACCATTCAGGAGCTTAAAGTTCAATTTTGATAGAAATGTTATATTCTTTTAAGCAATCTTCCATGGGGGGGTTGAATAACCAATAGTTTGGCAGGCTTTCATAAATGCAAACCATTTTGGATCAGATTTTCTGATTTTTTTATCGGATTTGTTCAAATTAATAGTAGAAACTGTGAGGAGGTGGCCATTCATTGCCTCTTAGAGTCTGCTACTGAAAAGCAGCGATGAGTTTAGAAACTACACGTTATTTGCAGCTGGAAGTACAGCCGTTTTTGTAAAAAATTATAAGCTGTTAGAGTCTCTAAAATAATTTTTGTTAGGGTTACTTTTTCCTGTAATTTAGTTGGTTTCAAACTTTCAGATGTCCATCAGCTTAGTTTCTTGGAGAGTTGTGTTTATTTGACATTTATGTCTTTACTAATAATAATGGTTTCCATCATTGCAAC

Fln Alignment:

sp_v1.1_unigene4982___MQEREVTDGSADKKESAIDHLPATVHDEGPPARETSVVIQVAPKKSYASIVKVMKENAALIVAVQKPSLAKAVPSAERQATYSSPPKASANESLSSTAVDMTDNSASPEAEGNACSIYIKHLPVNVTPAQVEEEFKKFGAIKPNGVQVRSKQXXXXXXXXXXXXAASVQTALQASPITINGRQAFVEEKKTTSSTRATXXXXXXXXXXXXNDGIRVRGAYAGRGNGRTDFXXXXXXXXXXXXXDFVNRADLGNRARGSLSGRAVWFPDAPEGYQR-DHIRNVGRGTQRGGMMASNGPRMGSVAA
D5AB67______________MQVREITEGSADRKESAIDHLPAAVHNEGPPAHENPVVIQDAPKKSYASIVKVMKENAALSVAVQKPSLARAVPSAERQATTSSPPKASANESFSSTPVDMADNSASPEAEGNGCSIYIKHLPVNVTPAQVEEEFKKFGAIKPSGVQVRSKQGGFCYGFVEFEEVASVQTALQASPIIINGRQAFVEEKKTTSGTRATRGRPFPARGGFRNDGMRARGAYGGRGNGRTDFVNGAYGGRGNGRTDFVNRADLGNRARGSFSGRAGWFSDTPEGYQRDDQMRNVGRGTQRGGMMTSNGPRVGSVAA

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
231	16		83		0.994512
252		83	16		0.994512
624		12	87		0.992554
629	87		12		0.992554
630		87		12	0.992554
631	87		12		0.992554
633	87	12			0.992554
634		12		87	0.992554
637			12	87	0.992554
638	87		12		0.992554
640		87		12	0.992554
641	87		12		0.992554
642			87	12	0.992554
643		12	87		0.992554
645	87	12			0.992554
647		12	87		0.992554
648	12	87			0.992554
672	87		12		0.992554
790	71	28			1.0
791	71		28		1.0
793		28	71		1.0
795	71			28	1.0
797	28			71	1.0
798	71	28			1.0
801			71	28	1.0
804			28	71	1.0
810	71	28			1.0
815		33	66		1.0
816	33		66		1.0
835	71	28			1.0
841		28	71		1.0
843	71			28	1.0
844		71		28	1.0
847	71		28		1.0
849			71	28	1.0
850			28	71	1.0
855	71			28	1.0
913			42	57	1.0
2031		85		14	0.994477
2032			14	85	0.994477
2033			14	85	0.994477
2044		16		83	0.995451
2143			42	42	1.0
2440	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain