SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4953

Length: 1413 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene4953 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutathione S-transferase zeta class n=1 Tax=Pinus brutia RepID=D2XZY3_9CONI	-	-	96%
FL-Next	tr=Glutathione S-transferase zeta class; Pinus brutia.	-	-	96%
Blast2go	glutathione s-transferase-like protein	-	-	80%

Source	InterPros	Term	Type	Identity
Blast2go	Glutathione S-transferase, N-terminal	IPR004045	-	80%
Blast2go	Glutathione S-transferase, C-terminal	IPR004046	-	80%
Blast2go	Maleylacetoacetate isomerase	IPR005955	-	80%
Blast2go	Glutathione S-transferase, C-terminal-like	IPR010987	-	80%
Blast2go	Thioredoxin fold	IPR012335	-	80%
Blast2go	Thioredoxin-like fold	IPR012336	-	80%
Blast2go	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D2XZY3

Fln msg:

Fln protein: MASVSQETPGISSTSARLKLYSFWRSSCAWRVRIALNLKGLPYEYKAVNLRQGEQFSEEFTKLNPIHFVPTLVDGDIIVADSLAILLYLEDKFPGHPLLPDDLQSKAISLQAAVLIGSNIQPLQNMGILNLIQEKLGPKEHQAWPKHFIEKGFTGLEKLLKDVSGKYSIGDKLTLADIFLVPQVYNARSYNVDMSKFPTLNRIDQALAELPEFQAAVPERQPDAKA*

Protein Length: 228

Fln nts: TTTCAAATCAGAAGCAAATTTGACAGTGTCTGCTGCCTGCTACTCCATTTTAACACATCGGTTTCTGTTACTCTATTTTAACACATACATAATGTATATGGGTGCGAAAAAAATTGCTGTATTTGACGCGTCAAATTCCATCGCTGCTCCCAAGTCAGGTCAAACTCGCATATACGGATCGTAATGTCTGCCGTATAGCCCCATTTCTCGACTTCCCGAACGCTCGCAAGTCAGGTCAAACTCGCATCTACGGGTCGGAACGGCCCCTGCAGAACCTTGGATTCTCTGATACTCGCCTCCTTGAACGCTTCGGGCATCATCCTTACGATCGAGCTCATACACGATCACTC_-_ATGGCATCCGTTAGTCAGGAAACCCCTGGGATCAGTTCGACTTCTGCAAGACTGAAGCTCTACTCTTTCTGGCGCAGTTCATGTGCTTGGCGAGTCAGGATTGCCCTAAATCTGAAAGGGTTACCATATGAGTACAAAGCAGTGAATCTGCGGCAAGGAGAGCAATTTAGTGAAGAGTTTACCAAATTGAACCCCATTCATTTTGTTCCAACATTGGTGGATGGCGATATAATTGTTGCGGATTCACTTGCCATATTGTTGTACTTGGAGGACAAATTTCCTGGACACCCGCTTCTCCCAGATGATCTTCAGTCGAAAGCAATTAGCTTACAGGCTGCTGTTCTCATTGGATCAAACATACAACCACTGCAGAATATGGGTATCTTGAATTTGATTCAAGAGAAACTTGGACCAAAGGAGCATCAAGCATGGCCTAAACACTTCATAGAGAAAGGTTTTACTGGTTTGGAGAAGCTGTTGAAAGATGTTTCAGGAAAGTATTCTATAGGAGATAAACTTACATTGGCAGATATCTTTCTTGTCCCACAAGTTTACAATGCAAGAAGTTACAATGTTGACATGTCAAAGTTCCCAACTTTGAATAGGATCGACCAAGCATTAGCAGAACTGCCAGAATTCCAGGCTGCTGTGCCTGAGAGACAACCTGATGCAAAAGCATGA___TTTGACATAGTTTGTCAGTATAAACTTGAGAATTTCAACTCTATATTTGCATAAGTTTTATCATATTTCATATGTCCCTCCAAGCATTAATACTCTTAGTCGTTTGAGAGGGATTCTTATATGACATATTGATTTCTATTAATCTTGAAATTAATACTAGCAGTAATTTATTTAATTGATAGCGGGGACTGTCAACTAAAATAGTGCTAAAGCAGAACAGAAATTTCTTAGACTTTTAAATTTCTTACGACTTTGGATACTTAAAGGAAGAATGGAACTGAAACTACCAATTTCATTGTCTCAGATATTGGGAAATGTGGGATTCTGTAAACAAAGTGCTATGGTTAATAAGCAACGATTCCTATTATATATTATTGCTAGC

Fln Alignment:

sp_v1.1_unigene4953___MASVSQETPGISSTSARLKLYSFWRSSCAWRVRIALNLKGLPYEYKAVNLRQGEQFSEEFTKLNPIHFVPTLVDGDIIVADSLAILLYLEDKFPGHPLLPDDLQSKAISLQAAVLIGSNIQPLQNMGILNLIQEKLGPKEHQAWPKHFIEKGFTGLEKLLKDVSGKYSIGDKLTLADIFLVPQVYNARSYNVDMSKFPTLNRIDQALAELPEFQAAVPERQPDAKA
D2XZY3______________MASVSQETPGISSTSARLKLYSFWRSSCAWRVRIALNLKGLPYEYKAVNLRQGEQFSEEFTKLNPTHFVPTLVDGDIIVADSFAILSYLEDKFPGHPLLPDDLQSKAISLQAAVLIGSNIQPLQNISVLNLIQEKLGPKEHQAWPKHFIEKGFTALEKLLKDVAGKYSIGDKLTLADIFLVPQVYNARSYNVDMSKFPTLNRIDQALAELPEFQAAVPERQPDAKA

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
82	75			25	0.996473
324	87		12		0.992554
326	87	12			0.992554
329		12		87	0.992554
330	12			87	0.992554
332			12	87	0.992554
334		87		12	0.992554
335	87	12			0.992554
337	87	12			0.992554
338			11	88	0.923564
340		11		88	0.923564
341	88		11		0.923564
707		11	88		0.923564
708		11		88	0.923564
709	11			88	0.923564
716	85		14		0.993533
751	88		11		0.923564
1050		90		10	0.90298
1052	90			10	0.90298
1093			75	25	1.0
1198	20		80		0.999996
1200	80	20			0.999996
1201	80		20		0.999996
1202			80	20	0.999996
1205		10	90		0.90298
1207		10	90		0.90298
1208	90	10			0.90298
1212		11	88		0.923564
1213		11	88		0.923564
1214		11	88		0.923564
1215		11	88		0.923564
1275		16	83		0.994512
1276		16	83		0.994512
1277	83	16			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain