SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4940

Length: 1639 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4940

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	tetratricopeptide repeat protein, tpr, putative	-	-	63%
FL-Next	sp=Uncharacterized TPR repeat-containing protein At1g05150; Arabidopsis thaliana (Mouse-ear cress).	-	-	58%
Blast2go	calcium-binding ef hand family protein	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	EF-hand-like domain	IPR011992	-	0.0	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: O23052

Fln msg: your sequence is shorter than subject: 331 - 808

Fln protein: MGGLSSMIRRADQHGGSEAQVQMGTGSTSLEEGILVVEPGRFRRASGKTTPRQYLSCALDIRSFQRLTRLNRCDINLVKKELTETKVPISQSGSGVSEKTIRKAALEQILRRLLHFLKPETFQGAVKAVNERVLTVLDGTGSGRVDLGLFYAILAPICAGPPEKRKRYAFDALVWRSAKGIGAQIGKLDANSYIRLLRAVYLPSEGVSDMMEVHGEDDTASISFPEFLEMFDDPDWGFGIMNTLVKLEAGDRVRHGRLTCAVCSYPIIGPRFKEVNSHFSLCSICYSEGKVPVAFKQEEYRFKEYGSETEAIKDKFKLFSLHSDSSPDNP*

Protein Length: 332

Fln nts: ATGGGAGGGCTTTCTTCAATGATTAGAAGAGCAGACCAGCATGGAGGTTCTGAAGCTCAGGTACAGATGGGAACTGGTAGTACAAGCTTGGAAGAAGGAATATTGGTTGTTGAACCAGGCAGGTTTAGAAGAGCAAGTGGAAAAACGACACCTAGACAGTACTTGTCCTGCGCTCTAGACATCAGAAGCTTCCAGAGGCTAACTAGATTGAATCGTTGTGATATAAATCTTGTGAAAAAGGAATTAACTGAAACAAAAGTTCCCATTTCTCAATCTGGCAGTGGTGTATCTGAGAAAACCATCCGCAAAGCAGCACTTGAACAAATTTTACGGAGGTTGCTCCATTTTCTCAAGCCAGAGACATTCCAAGGAGCTGTCAAGGCAGTGAATGAAAGAGTGTTAACTGTATTGGATGGAACAGGATCAGGCAGAGTGGATTTGGGCTTGTTTTATGCAATTCTTGCTCCCATTTGTGCAGGTCCACCAGAGAAGAGAAAACGTTATGCTTTTGATGCTTTAGTGTGGCGATCAGCAAAGGGaATcGGTGCACAGATTGGGAAGCTAGATGCAAATTCCTATATTAGACTGTTAAGGGCAGTCTATCTTCCATCAGAAGGAGTTAGTGACATGATGGAAGTTCATGGAGAGGATGACACTGCAAGTATCTCATTCCCCGAGTTTTTAGAAATGTTTGATGATCCAGACTGGGGGTTCGGCATCATGAACACCCTGGTAAAGCTGGAGGCAGGTGATAGGGTGCGTCATGGTCGTCTAACTTGTGCAGTTTGCTCCTATCCAATCATCGGACCAAGATTCAAAGAGGTGAATTCTCATTTTAGCCTATGCTCAATTTGCTACAGTGAAGGGAAGGTACCTGTTGCATTCAAGCAAGAAGAATATAGGTTTAAAGAGTATGGCAGTGAAACTGAGGCGATTAAAGACAAATTCAAACTATTTTCTTTACACAGTGATTCCTCTCCAGATAATCCTTAG___CGCTGCTTTTTTATCTGGCATAAAAATTGAGGGTGTTGTCAAATGCCAAGTATTCAGGCTATTCTTCTCCACCATTATGTAGAAATGGCACAGTTATTTCATTGAGCGGTTCTTTTGTACCAGTGTGAAGAAGATCAGATCCGTTTTGCTTTTCTCGAATGGAAAATGCAGAAACAAATTTATGGGTGTTGTCAAATGTCAAATAGTTGGAGCCATTTTTATTCACAATCCTATAGAGGTGGGGGTAGTTCTTTCGTTCTAGTGTGAAAAGGTTTTGTTGTAAGTATTCAATCTTTTGTTTGTTTCTTTTTTTTTTTTGATTTGTAAAATGGATCTGTTAAGGAGAGACTTACAATTCTTTGTCCTGTAGAGATTTCCAATAAAGTTCTTCAGAGCCAGTATTGAGATTCGTCCTGTAGGGTTGGAATGTTTAGTAATAGGGTAAGCACAGTTTGCTACACTCCACTCTACGGCCTTTTAACTTATGTAAGATATGTAGCATAATATCTATTCCCATTGTTTCTCTTTGCTTGTACCTTGAGCATGTCATTGAAGTTAAAATGGAATGGAAGTGATAATAGCTAGCAAACTTGATGCTTCCTGGTGTATCGTAATTGAGCAGACCTTTAAGTTTGTGGTACTCAAT

Fln Alignment:

sp_v1.1_unigene4940___EEGILVVEPGRFRRASGKTTPRQYLSCALDIRSFQRLTRLNRCDINLVKKELTETKVPISQSGSGVSEKTIRKAALEQILRRLLHFLKPETFQGAVKAVNERVLTVLDGTGSGRVDLGLFYAILAPICAGPPEKRKRYAFDALVWRSAKGIGAQIGKLDANSYIRLLRAVYLPSEGVSDMMEVHGEDDTAS---ISFPEFLEMFDDPDWGFGIMNTLVKLEAGDRVRHGRLTCAVCSYPIIGPRFKEVNSHFSLCSICYSEGKVPVAFKQEEYRFKEYGSETEAIKDKFKLFSLHS
O23052______________EGPFIVVEPSKFKTVGEKTTLRPDLATALQIRAFQRVTRLGKCDVEAVRKEMRDNDVPVSYSGSGGPTKSIRKPNLEEILRRLLSSLKPDTFQGAIKAINEKILALLDDSGSGRVDMGMFYAVIAPLCGGHSDKRKRVAFDALLWRPVNEGSSQITKTDAVKYIKLLRAIYIPSHGMSEMLEVHGEEEAESSVTVTFNQFLAMFDDPDWGFGIMSTILKLEANDRNRHGNQVCSVCRYPVIGSRFKEVKARFSLCNQCYGEGKVPPSFKQEEYKFREYESEAEAMKAKCVCFSMQS

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
860			16	83	0.994512
861	80			20	0.995493
868	80	20			0.995493
869		25	75		0.996473
870			75	25	0.996473
873	75		25		0.996473
874	75	25			0.996473
875			75	25	0.996473
1088	77	18			1.0
1089	81	18			1.0
1094	82		8	8	0.999136
1096	88	3		7	0.999079
1097		7	92		0.999664
1099		15	3	80	1.0
1101		7		92	0.999664
1386	88		11		0.923564
1568	16		83		0.994512
1590	20		80		0.995493
1591		75	25		0.996473
1603	33			66	0.997452
1604	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain