SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4932

Length: 2390 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene4932
CGTCGTGACCTTGGCTGTTATGAGGGGATTTCTATCGTTTCATTAGGTTTGGCTGCCGAGGTATGTATGTTTTGCTCCGTTTCATTGAAATTGATATGAAAATGCAATCATTCTCGACTATAGCAGGGGCAAGGCAATAGGGCTTATTTCTTTTTTGGGCTGACAATTCGAATTTTTTTCTCTTGAATGTCATCTGGGCTTTGTGATCATTTAAAACAATCATATTGGATACAAATTTTTGGAGAAACCTGCAAGATTTGTTTGGGTTGTCAAGATTTGGCAATTTCTTTTCCCCTTTCCCGAAGCTCGTGAATTTTGTGATCACTGGAAAAACTGCATATTGCGAAGCAAAATTATGCCATAAACCTGGATTTCCTCACCAATTTTCTGCATCAATCAACAGGGAGGAAGGTTTGTGAGACTGCGGTGCAGTTTAACTCGAAACCCTAAGCACGGTGTTAGTTGAGAAAAGGGAGGAGAAATGGTTGATTCTCCGAATGGAATTGATGACAAAGTGGCATATTTTCAAGCCATTACTGGTTTAGATGATCGGGCATTAAGTATCCAGATCCTGGAAGCTCATGGTTGGGACTTGGATTCGGCCATTTCTGAAATTACAGACGATGGAAATTCCTCATCTGCTAACTTGGCATCTGGGTCTGCAAATAATCCTTCGTCGGTTGGGAATTTTACTTCAGGATCATGGCAAGGAATAGAAGGATCTAATGTGGGCGACAATCAAGTGGTGGCCCATCCTGGTACTCCTGGAATTGCGTGGAGGATTGTGACTTTGCCATTTTCTATTGTCAGAGGTAGCTTTGGTCTTCTTTCTGGTGCTGTTGGCTTGGGCATGTGGGTGGCAGGAGGGGTTCTTTCTCATTCTCTCAATGCGATCGGATGGGGCTCTGGGGAATTGCGGCCAGGCCAGGGTGAAGAGAGTGCTCCTCTTGCTTCTATGTCTGCCGGGGCAGCAGAAGCTCTGGCTTTTATTAATCTGTTCGAGAGGGAATATGGCAATTTCCATCCTGCTTTCCAGACAGCTGGCTTTATGGAGGCTTTGAGGACCTCTCGTGAAGAGTTCAAGTTATTGTTCGTTTACTTGCATTCTTCGGAACATCCGAACACGCCGACGTTCTGTCAAGATACTCTGTGCTCTGAGGTGGTCGTGGAATATATCAATCAGAATTTTGTTTCATGGGGAGGCAATGTCAGGACCAGTGAAGGTTTTAAGATGAGTAACAGTCTAAAAGCATCGACTTTTCCTTTTTGTGCTGTTGTCATGTCGGCGACCAACCAGCGGATTGCCCTTCTACAACAGGTTGAGGGCCCAAAATCTCCTTCAGAGCTGCTGTCAGTTCTTCAGAAGGTGGTTGAAGAAAGTGGGTCAGTGCTTGTTGCAGCTCGAATTGAAGAGGAAGAGAGGAGGCATAATAGGCGATTGAGAGAAGAACAGGATGCTGCCTATCAAGCTGCCCTTGAAGCTGACAGAGCAAGAGAGCGTCAAAGGCAGGAAGAGGCTGAACGCTTGGAAAGAGAGGCAGTTGAAGCTGAGAAGAGACGCAAAGAAGAGGAAGAGGCTCTGGAAAGAGTTGCAAGGGAAGCAGCTGAGAGAGAAGCTGCACTGGAAAGGCGACGTCAAGAGAAGGCAATGTCATTGGGCATGGAGCCCGAGAAAGGGCCAGATGTTACACAGGTCCTTGTGCGGTTTCCTAATGGGGAGCGGAAGGAACGGAGATTTCATAGCTCAGCAAAAGTTCAGTCCCTTTATGACTATGTTGATTCATTAAATTGTCTGCTTGCTGAGAAATACAGCTTAGTCTCAAATTTTCCTCGAGTTGTTTATGGTCCGGACAAATATGTTCTGTCCTTGAAGGAAGCAGGTCTTCATCCACAGGCTAGTCTGTATGTGCAGGTGGAGGATGCCTAAGAGTATTGGACAAACTTTTGATCCTGTCATCTCACTAGTTTTGGTGAATTCCAATTAAGTCATTCTTTGAAGCTGTAAAATATCTTTTGATTATAGAGTGAAATTGCCTGTCCACATTTCTTCTTGATAATGTGAATTATCTATGCCAGTAAAATTGTCCTTCAAATCCTAGGCTCCTCGCAAGACATTAAGATCTTGGCGCAACATTCTCCCACATTGAATGACTTTGTTTTATGGAAAGCTTATGTGGTTCATGACTATTGTTTCTTTGTGGGGACTATGCATTGTTTTATTATGTATTAGTAATGCATGTAGGGATGTTTTTCATACTATTACGGCACTTTGAATGAGTTGGCAAGTCAAACATACTCCCAACTCCCAACTGCTGCACTCTGGCGTCAATTTTACGTCATGTGAGATGCTGACTGTTTGGCATTCTTTCTATAATATATCTCTCTTCCAC

Ace file of the UniGene sp_v1.1_unigene4932

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to UBX domain-containing protein n=1 Tax=Vitis vinifera RepID=UPI0001982D86	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	65%
Blast2go	protein	-	-	73%

Source	InterPros	Term	Type	Identity
Blast2go	UBX	IPR001012	-	73%
Blast2go	UAS	IPR006577	-	73%
Blast2go	UBA-like	IPR009060	-	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HU62

Fln msg:

Fln protein: MVDSPNGIDDKVAYFQAITGLDDRALSIQILEAHGWDLDSAISEITDDGNSSSANLASGSANNPSSVGNFTSGSWQGIEGSNVGDNQVVAHPGTPGIAWRIVTLPFSIVRGSFGLLSGAVGLGMWVAGGVLSHSLNAIGWGSGELRPGQGEESAPLASMSAGAAEALAFINLFEREYGNFHPAFQTAGFMEALRTSREEFKLLFVYLHSSEHPNTPTFCQDTLCSEVVVEYINQNFVSWGGNVRTSEGFKMSNSLKASTFPFCAVVMSATNQRIALLQQVEGPKSPSELLSVLQKVVEESGSVLVAARIEEEERRHNRRLREEQDAAYQAALEADRARERQRQEEAERLEREAVEAEKRRKEEEEALERVAREAAEREAALERRRQEKAMSLGMEPEKGPDVTQVLVRFPNGERKERRFHSSAKVQSLYDYVDSLNCLLAEKYSLVSNFPRVVYGPDKYVLSLKEAGLHPQASLYVQVEDA*

Protein Length: 483

Fln nts: CGTCGTGACCTTGGCTGTTATGAGGGGATTTCTATCGTTTCATTAGGTTTGGCTGCCGAGGTATGTATGTTTTGCTCCGTTTCATTGAAATTGATATGAAAATGCAATCATTCTCGACTATAGCAGGGGCAAGGCAATAGGGCTTATTTCTTTTTTGGGCTGACAATTCGAATTTTTTTCTCTTGAATGTCATCTGGGCTTTGTGATCATTTAAAACAATCATATTGGATACAAATTTTTGGAGAAACCTGCAAGATTTGTTTGGGTTGTCAAGATTTGGCAATTTCTTTTCCCCTTTCCCGAAGCTCGTGAATTTTGTGATCACTGGAAAAACTGCATATTGCGAAGCAAAATTATGCCATAAACCTGGATTTCCTCACCAATTTTCTGCATCAATCAACAGGGAGGAAGGTTTGTGAGACTGCGGTGCAGTTTAACTCGAAACCCTAAGCACGGTGTTAGTTGAGAAAAGGGAGGAGAA_-_ATGGTTGATTCTCCGAATGGAATTGATGACAAAGTGGCATATTTTCAAGCCATTACTGGTTTAGATGATCGGGCATTAAGTATCCAGATCCTGGAAGCTCATGGTTGGGACTTGGATTCGGCCATTTCTGAAATTACAGACGATGGAAATTCCTCATCTGCTAACTTGGCATCTGGGTCTGCAAATAATCCTTCGTCGGTTGGGAATTTTACTTCAGGATCATGGCAAGGAATAGAAGGATCTAATGTGGGCGACAATCAAGTGGTGGCCCATCCTGGTACTCCTGGAATTGCGTGGAGGATTGTGACTTTGCCATTTTCTATTGTCAGAGGTAGCTTTGGTCTTCTTTCTGGTGCTGTTGGCTTGGGCATGTGGGTGGCAGGAGGGGTTCTTTCTCATTCTCTCAATGCGATCGGATGGGGCTCTGGGGAATTGCGGCCAGGCCAGGGTGAAGAGAGTGCTCCTCTTGCTTCTATGTCTGCCGGGGCAGCAGAAGCTCTGGCTTTTATTAATCTGTTCGAGAGGGAATATGGCAATTTCCATCCTGCTTTCCAGACAGCTGGCTTTATGGAGGCTTTGAGGACCTCTCGTGAAGAGTTCAAGTTATTGTTCGTTTACTTGCATTCTTCGGAACATCCGAACACGCCGACGTTCTGTCAAGATACTCTGTGCTCTGAGGTGGTCGTGGAATATATCAATCAGAATTTTGTTTCATGGGGAGGCAATGTCAGGACCAGTGAAGGTTTTAAGATGAGTAACAGTCTAAAAGCATCGACTTTTCCTTTTTGTGCTGTTGTCATGTCGGCGACCAACCAGCGGATTGCCCTTCTACAACAGGTTGAGGGCCCAAAATCTCCTTCAGAGCTGCTGTCAGTTCTTCAGAAGGTGGTTGAAGAAAGTGGGTCAGTGCTTGTTGCAGCTCGAATTGAAGAGGAAGAGAGGAGGCATAATAGGCGATTGAGAGAAGAACAGGATGCTGCCTATCAAGCTGCCCTTGAAGCTGACAGAGCAAGAGAGCGTCAAAGGCAGGAAGAGGCTGAACGCTTGGAAAGAGAGGCAGTTGAAGCTGAGAAGAGACGCAAAGAAGAGGAAGAGGCTCTGGAAAGAGTTGCAAGGGAAGCAGCTGAGAGAGAAGCTGCACTGGAAAGGCGACGTCAAGAGAAGGCAATGTCATTGGGCATGGAGCCCGAGAAAGGGCCAGATGTTACACAGGTCCTTGTGCGGTTTCCTAATGGGGAGCGGAAGGAACGGAGATTTCATAGCTCAGCAAAAGTTCAGTCCCTTTATGACTATGTTGATTCATTAAATTGTCTGCTTGCTGAGAAATACAGCTTAGTCTCAAATTTTCCTCGAGTTGTTTATGGTCCGGACAAATATGTTCTGTCCTTGAAGGAAGCAGGTCTTCATCCACAGGCTAGTCTGTATGTGCAGGTGGAGGATGCCTAA___GAGTATTGGACAAACTTTTGATCCTGTCATCTCACTAGTTTTGGTGAATTCCAATTAAGTCATTCTTTGAAGCTGTAAAATATCTTTTGATTATAGAGTGAAATTGCCTGTCCACATTTCTTCTTGATAATGTGAATTATCTATGCCAGTAAAATTGTCCTTCAAATCCTAGGCTCCTCGCAAGACATTAAGATCTTGGCGCAACATTCTCCCACATTGAATGACTTTGTTTTATGGAAAGCTTATGTGGTTCATGACTATTGTTTCTTTGTGGGGACTATGCATTGTTTTATTATGTATTAGTAATGCATGTAGGGATGTTTTTCATACTATTACGGCACTTTGAATGAGTTGGCAAGTCAAACATACTCCCAACTCCCAACTGCTGCACTCTGGCGTCAATTTTACGTCATGTGAGATGCTGACTGTTTGGCATTCTTTCTATAATATATCTCTCTTCCAC

Fln Alignment:

sp_v1.1_unigene4932___IDDKVAYFQAITGLDDRALSIQILEAHGWDLDSAISEITDDGXXXXXXXXXXXXXXXXXVGNFTSGSWQGIEGSNVGDNQVVAHPGTPGIAWRIVTLPFSIVRGSFGLLSGAVGLGMWVAGGVLSHSLNAIGWGSGELRPGQGEEXXXXXXXXXXXXXXXXFINLFEREYGNFHPAFQTAGFMEALRTSREEFKLLFVYLHSSEHPNTPTFCQDTLCSEVVVEYINQNFVSWGGNVRTSEGFKMSNSLKASTFPFCAVVMSATNQRIALLQQVEGPKSPSELLSVLQKVVEESGSVLVAAXXXXXXXXXXXXXXXXQDAAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSLGMEPEKGPDVTQVLVRFPNGERKERRFHSSAKVQSLYDYVDSLNCLLAEKYSLVSNFPRVVYGPDKYVLSLKEAGLHPQASLYVQ
F6HU62______________VADKLAYFQAITGLEDPDLCSEILAAHGWDLELAISSFTVTNSDRPESSATVAADVAEVGRSEQSSEELRLLQISETMGGVVA---PPGLAWKLITLPISVISGSLGLISGAIGLGMWAAGGVLSYSLSMIGLGSGSGR--NGDSSSPLVSVSAAGAEAMDFVASFEKDYGATRPNFVTEGFMDGLQLSRNAFKLLFVYLHSPDHPDTPLFCERTLCSEPLAAFINENFVSWGGNIRASEGFKMSNSLKASRFPFCAVVMAATNQRIALLQQVEGPKSPEEMLTILQKVLEESAPVLVAARLDAEERRNSTRLREEQDAAYREALEADQARERQRKEEQERLEREAAEAERKRKEEEEARERAAREAAEKEAALARMRQEKALSLGSEPEKGPNVTQVLVRFPTGERKDRRFHSTATIQSLYDYVDSLGCLDAESYSLVSNFPRVVYGPEKLSLSLKEAGLHPQASLFVE

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
23		33	66		0.997452
293		85		14	0.993533
306			71	28	1.0
313	85		14		0.993533
910		40	60		1.0
1451	88			11	0.923564
1452	77	11		11	0.968132
1453	11	77	11		0.968132
1454	88		11		0.923564
1456	11		88		0.923564
1705		90	10		0.90298
1706			90	10	0.90298
1710		10		90	0.90298
1711	10	90			0.90298
1714	90	10			0.90298
1716			10	90	0.90298
1779			10	90	0.90298
1981		93	6		0.999153
1983	93	6			0.999153

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain