SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4887

Length: 2156 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene4887
CGTCGTGACCTTGGCTGTCACTCAATTTTGACACATTGGTTATTGTTTATTTTAGAGGTAGAACTATCCCAAGTAGAAATATACTATTCAACTATCCATAAAGTTGGGAATTTTATTCCTTGTTTGCAACCTCTAATGGAAAAACGCTTGCAGATATTTTTTTATTCTATATCCTTAAACCCTACGTTCGCATCCTCGTGTTGAGCCGCCATGCGTAAAACCCCCTTAATGCAAATTTCCTTTTCCTTCGATTGTGTGGTTCTTTTTGTTGCTTTGGAGGCACTTCCTGGTAGGTTTCATTTTCAGCAATGGCTCGCAATCTGAAGAAGAAGAAGAGAATTCCGAAGACGCGCAAGGTTTCCAAGAAAGGCGAGGGAACTTCAAAGACGACGCAGCAAGATGCCAAGGTTTGGCAGCCGGGAGTTGATAGATTGGAGGAAGGAGAAGAGCTGCAGTGTGATACATCAGCTTATGATTGTTTACATGCCTTTCATATCGGGTGGCCTTGTTTGAGTTTTGACATAATACATGATTCCCTAGGACTTGTACGCACTGAATTTCCTCATACTGTCTATTGCATAGCTGGGACACAGGCAGATAATGCAGCAGATAATGCAATTGGAGTTGTCAAGCTGTCAAATATCAGTGGCAAAAAGCGGAAGCTGCTGCCTGCTGTCTCAGATGATGAGGAAGATGACAGTGATAACAGTAGTGATGACGATGATGAAGATGATGATTTGGGATTTGAGTCAAAGAAGCCTACCTTACAGGTACGTATGGTGGCTCATCAAGGTTGTGTAAATCGCATACGCTCAATGCAACAGCAGCCGTCTATTGTTGCAACATGGGCTGATAATGGCTATGTGCAGATCTGGGATTTTAATTCACATTTGAGCTCTTTGGCAACATCCGATCCCAGAGTAAGCACAGCATTGAGTGCTGCTATTCATCAGGCTCCCCTACAGATTTTCGGTGGACACAAAGATGAGGGTTATGCAATAGACTGGAGTCCCGTGACACCTGCAAGGCTTCTTTCTGGTGATTGCAAGGGCTGCATACATGTTTGGGAACCTACATCTGGTGGAAAATGGACTGTAGACAAAAGTCCTTTCAAGGGCCACACAGATAGTGTTGAGGATCTGCAGTGGAGCCCAACAGAAGCCAATGTTTTTGCTTCATGTTCTGTTGATAGAAAGATAGCTATATGGGATGCCCGAATTCGGGAACAACCAGCACTCTCAATAAAGGCACATGATGCAGATGTCAATGTTATATCATGGAACCGCCTGGCAAGTTGCATGATATCCTCTGGAAGTGATGACGGAAGCTTCTCCATTTGGGATCTTAGATCATTCAAGGAAGATTCTCTTGTAGCTCATTTTAAATACCATAAGCAGCCAATAACATCCATTGAATGGAGTCCTCATGAAGCTTCAACCCTCGCAGTATCATCAGCAGACAATCAGCTCACTATTTGGGACCTATCACTAGAGCGTGACGAAGAGGAAGAAGCAGAGTTTAAAGCTGCATTGGAAGAGAAAGTTAATGCACCGGAAGATCTACCTCCACAATTACTTTTTGTTCATCAGGGTCAAAAGGATCTCAAGGAGGTGCATTGGCATGCTCAAATTCCAGGATTACTCATGTCTACTTCTTCTGATGGATTCAATGTTTTTAAGCCAACGAACATAGAAAATGTTCTTCCACAGCAATAAGATATATGTTGTGTCATGGAAAGCCATAAACACTTTATTAGGATAAAATTTCTCTCTTCTCACCTGCATTTTCCGGCCTCTTTCTTATTTATCAATTCCTTTATTTATCATCTTTTTGTATAAATCAAGCTTCGTTCCCAGGCTGTAGTTCATGTTCCCACTTCTGACTTTTGAAGGGTCGATGAAGCCATGAATTGTGTAGACATTTTACTGGCAGAAGCTTTGAATTGATTCATGGTGCATATAGTGGAGTAACATGGTCCCATTATCTTGATCCTGCAGTCACTTTTCGGGTTTTGTTTATTTGAAAAGTGATTAAAACATTAACAAAGTTAGTCGAGTTTTTTCTGAGAGAGAGTTGTATTGGAGAGTGAGCTTGTGATATGGAGGCTCTTTTAACTGCCCGGATGTTTCCACTGTTTATTTTGTTGCAAATCATGT

Ace file of the UniGene sp_v1.1_unigene4887

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WD-repeat protein, putative (EC:2.3.1.48)	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	wd-40 repeat protein	-	-	78%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat	IPR001680	-	78%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	78%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	78%
Blast2go	WD40-repeat-containing domain	IPR017986	-	78%
Blast2go	WD40 repeat, subgroup	IPR019781	-	78%
Blast2go	WD40 repeat 2	IPR019782	-	78%
Blast2go	G-protein beta WD-40 repeat	IPR020472	-	78%
Blast2go	Histone-binding protein RBBP4	IPR022052	-	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAW3

Fln msg:

Fln protein: MARNLKKKKRIPKTRKVSKKGEGTSKTTQQDAKVWQPGVDRLEEGEELQCDTSAYDCLHAFHIGWPCLSFDIIHDSLGLVRTEFPHTVYCIAGTQADNAADNAIGVVKLSNISGKKRKLLPAVSDDEEDDSDNSSDDDDEDDDLGFESKKPTLQVRMVAHQGCVNRIRSMQQQPSIVATWADNGYVQIWDFNSHLSSLATSDPRVSTALSAAIHQAPLQIFGGHKDEGYAIDWSPVTPARLLSGDCKGCIHVWEPTSGGKWTVDKSPFKGHTDSVEDLQWSPTEANVFASCSVDRKIAIWDARIREQPALSIKAHDADVNVISWNRLASCMISSGSDDGSFSIWDLRSFKEDSLVAHFKYHKQPITSIEWSPHEASTLAVSSADNQLTIWDLSLERDEEEEAEFKAALEEKVNAPEDLPPQLLFVHQGQKDLKEVHWHAQIPGLLMSTSSDGFNVFKPTNIENVLPQQ*

Protein Length: 470

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTGACACATTGGTTATTGTTTATTTTAGAGGTAGAACTATCCCAAGTAGAAATATACTATTCAACTATCCATAAAGTTGGGAATTTTATTCCTTGTTTGCAACCTCTAATGGAAAAACGCTTGCAGATATTTTTTTATTCTATATCCTTAAACCCTACGTTCGCATCCTCGTGTTGAGCCGCCATGCGTAAAACCCCCTTAATGCAAATTTCCTTTTCCTTCGATTGTGTGGTTCTTTTTGTTGCTTTGGAGGCACTTCCTGGTAGGTTTCATTTTCAGCA_-_ATGGCTCGCAATCTGAAGAAGAAGAAGAGAATTCCGAAGACGCGCAAGGTTTCCAAGAAAGGCGAGGGAACTTCAAAGACGACGCAGCAAGATGCCAAGGTTTGGCAGCCGGGAGTTGATAGATTGGAGGAAGGAGAAGAGCTGCAGTGTGATACATCAGCTTATGATTGTTTACATGCCTTTCATATCGGGTGGCCTTGTTTGAGTTTTGACATAATACATGATTCCCTAGGACTTGTACGCACTGAATTTCCTCATACTGTCTATTGCATAGCTGGGACACAGGCAGATAATGCAGCAGATAATGCAATTGGAGTTGTCAAGCTGTCAAATATCAGTGGCAAAAAGCGGAAGCTGCTGCCTGCTGTCTCAGATGATGAGGAAGATGACAGTGATAACAGTAGTGATGACGATGATGAAGATGATGATTTGGGATTTGAGTCAAAGAAGCCTACCTTACAGGTACGTATGGTGGCTCATCAAGGTTGTGTAAATCGCATACGCTCAATGCAACAGCAGCCGTCTATTGTTGCAACATGGGCTGATAATGGCTATGTGCAGATCTGGGATTTTAATTCACATTTGAGCTCTTTGGCAACATCCGATCCCAGAGTAAGCACAGCATTGAGTGCTGCTATTCATCAGGCTCCCCTACAGATTTTCGGTGGACACAAAGATGAGGGTTATGCAATAGACTGGAGTCCCGTGACACCTGCAAGGCTTCTTTCTGGTGATTGCAAGGGCTGCATACATGTTTGGGAACCTACATCTGGTGGAAAATGGACTGTAGACAAAAGTCCTTTCAAGGGCCACACAGATAGTGTTGAGGATCTGCAGTGGAGCCCAACAGAAGCCAATGTTTTTGCTTCATGTTCTGTTGATAGAAAGATAGCTATATGGGATGCCCGAATTCGGGAACAACCAGCACTCTCAATAAAGGCACATGATGCAGATGTCAATGTTATATCATGGAACCGCCTGGCAAGTTGCATGATATCCTCTGGAAGTGATGACGGAAGCTTCTCCATTTGGGATCTTAGATCATTCAAGGAAGATTCTCTTGTAGCTCATTTTAAATACCATAAGCAGCCAATAACATCCATTGAATGGAGTCCTCATGAAGCTTCAACCCTCGCAGTATCATCAGCAGACAATCAGCTCACTATTTGGGACCTATCACTAGAGCGTGACGAAGAGGAAGAAGCAGAGTTTAAAGCTGCATTGGAAGAGAAAGTTAATGCACCGGAAGATCTACCTCCACAATTACTTTTTGTTCATCAGGGTCAAAAGGATCTCAAGGAGGTGCATTGGCATGCTCAAATTCCAGGATTACTCATGTCTACTTCTTCTGATGGATTCAATGTTTTTAAGCCAACGAACATAGAAAATGTTCTTCCACAGCAATAA___GATATATGTTGTGTCATGGAAAGCCATAAACACTTTATTAGGATAAAATTTCTCTCTTCTCACCTGCATTTTCCGGCCTCTTTCTTATTTATCAATTCCTTTATTTATCATCTTTTTGTATAAATCAAGCTTCGTTCCCAGGCTGTAGTTCATGTTCCCACTTCTGACTTTTGAAGGGTCGATGAAGCCATGAATTGTGTAGACATTTTACTGGCAGAAGCTTTGAATTGATTCATGGTGCATATAGTGGAGTAACATGGTCCCATTATCTTGATCCTGCAGTCACTTTTCGGGTTTTGTTTATTTGAAAAGTGATTAAAACATTAACAAAGTTAGTCGAGTTTTTTCTGAGAGAGAGTTGTATTGGAGAGTGAGCTTGTGATATGGAGGCTCTTTTAACTGCCCGGATGTTTCCACTGTTTATTTTGTTGCAAATCATGT

Fln Alignment:

sp_v1.1_unigene4887___GEGTSKTTQQDAKVWQPGVDRLEEGEELQCDTSAYDCLHAFHIGWPCLSFDIIHDSLGLVRTEFPHTVYCIAGTQADNAADNAIGVVKLSNISGKKRKLLPA-VXXXXXXXXXXXXXXXXXXXXLGFESKKPTLQVRMVAHQGCVNRIRSMQQQPSIVATWADNGYVQIWDFNSHLSSLATSDPRVSTALSAAIHQAPLQIFGGHKDEGYAIDWSPVTPARLLSGDCKGCIHVWEPTSGGKWTVDKSPFKGHTDSVEDLQWSPTEANVFASCSVDRKIAIWDARIREQPALSIKAHDADVNVISWNRLASCMXXXXXXXXXXXXWDLRSFKEDSLVAHFKYHKQPITSIEWSPHEASTLAVSSADNQLTIWDXXXXXXXXXXXXXXXXXXXKVNAPEDLPPQLLFVHQGQKDLKEVHWHAQIPGLLMSTSSDGFNVFKPTNIENVLPQQ
D5AAW3______________GEGTSKTRQQDAKVWQPGVDKLEEGEELQCDTSAYDCLHAFHIGWPCLSFDIIHDSLGVVRTEFPHTVFCIAGTQADNAANNAVGVVKLSNISGKKRKLLPAGSDDDEDDSDNSSDEDDEDDDDLGFESKKPTLQVRMVAHQGCINRIRSMQQQPSIVATWADNGYVQIWDFNTHLSSLATSDPRVSTALSAAVHQAPLQIFSGHKDEGYSLDWSPVTPARLLSGDCKGCIHLWEPTSGGKWTVDKSPFKGHTDSVEDLQWSPTEANVFASCSVDRKIAIWDARIREQPALSIKAHDADVNVISWNRLASCMIASGSDDGSFSIWDLRSFKEDSLVAHFKYHKQPITSIEWSPHEASTLAASSADNQLTIWDLSLERDEEEEAEFKATLEEKVNAPEDLPPQLLFVHQGQKDLKEVHWHAQIPGLLMSTSSDGFNVFKPTNIENVLPQQ

SNPs (tot: 3)

Position	A %	G %	T %	Probability
868		25	75	0.996473
888	50		50	1.0
1479		3	90	0.997952

SSRs (tot: 1)

Start position	End position	Sequence	Length
323	336	GAA GAA GAA GAA GA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain