SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4878

Length: 2561 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene4878
CGTCGTGACCTTGGCTGTCACTCAGTCTTCGTTTTAGTAAGTAAATGAGGCATCCGAAATTTTATTGCGAAAGGTGAGGCCCCGCGGGGAAGCTGTTTATCTTTGACCAAGCTGGAATGGGCGTTACTGCTTCCTGATAAACATGGGATTTGTGCAGGCGCTGCGCTGTGGAGAGATCGATCATCCACATCTGTATAGTCCTACCCAAATTGTCATCATGAACCTTCACAAATTCATAACATCTACAGTCTGTTTGCTCTGATATAACCACCATTCAAAAGTGGGAGTGAGAAATATATTGTTTTGCTGTACCCCTTCCGAGCGAGCGAGAAAGCTTGCTGAGAAATGTGGAAGTGGTCTCTCCACGGATGAACGAAGAAGTTCATATATCTAATGTCTCTTCAGCATTTGGCCTAGAAATGTCTGTTTGCAGCAGCATTTGGGTCAAGTATCATTTCAATGAGAACAACTAATCGGGTGATTTCAGTAACTAGGTTTGGTATTGAATCTCCATTTGCCACTTCAGAAATTACTTTTCTGATTGAATAGCCATCCGGTTCATTTCAGGGATCAGGTTTTGCCCTTTGGGTCAGTGCCAGGTCCTCCTAAAAGGGTAACTTTCTTCATATCTGGATGCTCGTTTCCTGAACTAGTCCCACGTCATCCTAAAAGAGTAACTTTCTTCATATCTGGATGCTAATTTGCTGAAATACATTTCAATTTTTGTTTCAAAAGATGGGCTTAGATTTTGTACACTGATGCTATTGACTGGTCTTATACACATAAGAAATGGAGAAGGTTGGAGATTTAATTGGATTAAAATCAATGCGAATAAACAATGGGAACGAAATTGCCAAAATGAGTACGTGCAAGGCTTTGATGTTCACTGGACCACTTGCTTCTCAAAATGTTGAATTTTTCGGCTTCACCCCAAAAGTTCTTAACATGCCACTGAAAAGGACTTTCAGAAGTGCATGTGTAAGGGCAAACACAAGCAGCAGCAGCAGTACAGAACAAAACCCATCTTCCTCTCCTCCCAAGCAGAAGAGTCAATTGCTAGCAATACTTGACCTCCCTAGTACTGTGTGGAGGCAGACACTTAATCCCCTTAGTAACTTTGGATTTGGCAAGAAGAGCATTCGAGAGGCGGGCGTGGGATTGTTTATGATATCAGGGGCTGTCCTGCTTGCTTTTACAGTTGTTTGGCTGAAGGGTTTACAGCTTCGATCTCGGTTCAAGAAGTACCAGGCAGTGGTTGAATTTTCTCAAGCATGCGGACTTACAGTTGGGACGCCAGTTAGAATCCGGGGATTTACTGTTGGGAGCGTTGTTCAGGTCAGGCCGAGTCTCGAGAAAATTGACGCTGTAATCCAGGTTGTGGATGAGAAAGTTGTTATTCCTCGCAATTCATTGGTTGAAGTGAATCAGTCTGGTCTTCTTATGGAAACTCTTATTGATATCACACCACGCCCTCCTGTTCCTACACACGCAGTAGGTCCTCTTGACCCTAACTGCAATAAAGAAGGGCTAATTGTTTGTGACAGAGAGAGGATAAAAGGAGAGCAGGGTGTAAGCTTGGATGAACTAGTTGGGATTTACACCAGGCTGGGTCGGCAAATGGATGAAATAAGTGTTACCAAAACATATGATTTGGCAGAAAGGGTTGCTTCAACTGTAGAGGAAGCGAGGCCTCTTCTTGCAAAGATCGAAGCAATGGCTGGGGATATTCAACCATTGTTGAGGGAGGTTCATGAGGGTGGGTTGCTGAAGGAGATTGAGCGCTTGACAAGGGTCCTTGCAGATACAAGTGGAGACTTGAGAAAATTGAATTCCTCAATTTTGACCCCAGAGAACACGCAGTTGCTTCGTCAATCAGTCTCCACCCTAATAACGACACTAAAGAATATAGAGAGTATTAGTGGAGACATATCTGGAGTGACAGGGGATGCAGCTACCAGAAATAACTTGAAGCTACTGATTCAATCTCTCAGCAGGCTTCTTTTAGATTAGAGGCAATATATTATTTATTGGGAGGCTTCGACTGTTTTTACCAGTGATTAATAAGCATGTTTAGACGTGTAAGTGCAGAATTTGTTAATAAGAAAACCAAGAAAGCTAGAGAGTACTCTAATACCATTATTAGAATTGTTCATGACTTGCTGTAAATTGTATGAAATAACATGTAATATCACAACGGAGCTAATAAATTTAAAAGTTTGTTAAACCAAGCAATGTACCACTTTAGGATTAAGCCCATACGGTCTTTCAGAGCTTTTATAATGACATTTATCCAAGCAGAATACATGGAGCATGGCAATCCACTTCTATTCACCTTAATAGGAAGTTGAAACTAATAATTCGCTAGAGTACTCTATGAGAATATACTTTTATCATTCAGTGTTGTTTAGCACTATTATCCTCTAGTAACCATGCCATTGATATCCTTCTTTGCACATTAGGTGTGATGGCTTGTTTTGCGAACATTCCTTTCATCCTGTGCGAATGCATATAGTTGCATTTCATCCATTTAATTTTTACAAGTTATTTTCTTCTTTACTAAT

Ace file of the UniGene sp_v1.1_unigene4878

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ABC-type transport system involved in resistance to organic solvents, periplasmic component	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	lipid transporter activity	GO:0005319	Molecular Function	81%
Blast2go	phospholipid binding	GO:0005543	Molecular Function	81%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPK5

Fln msg: your sequence is longer than subject: 407 - 130

Fln protein: MEKVGDLIGLKSMRINNGNEIAKMSTCKALMFTGPLASQNVEFFGFTPKVLNMPLKRTFRSACVRANTSSSSSTEQNPSSSPPKQKSQLLAILDLPSTVWRQTLNPLSNFGFGKKSIREAGVGLFMISGAVLLAFTVVWLKGLQLRSRFKKYQAVVEFSQACGLTVGTPVRIRGFTVGSVVQVRPSLEKIDAVIQVVDEKVVIPRNSLVEVNQSGLLMETLIDITPRPPVPTHAVGPLDPNCNKEGLIVCDRERIKGEQGVSLDELVGIYTRLGRQMDEISVTKTYDLAERVASTVEEARPLLAKIEAMAGDIQPLLREVHEGGLLKEIERLTRVLADTSGDLRKLNSSILTPENTQLLRQSVSTLITTLKNIESISGDISGVTGDAATRNNLKLLIQSLSRLLLD*

Protein Length: 408

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCTTCGTTTTAGTAAGTAAATGAGGCATCCGAAATTTTATTGCGAAAGGTGAGGCCCCGCGGGGAAGCTGTTTATCTTTGACCAAGCTGGAATGGGCGTTACTGCTTCCTGATAAACATGGGATTTGTGCAGGCGCTGCGCTGTGGAGAGATCGATCATCCACATCTGTATAGTCCTACCCAAATTGTCATCATGAACCTTCACAAATTCATAACATCTACAGTCTGTTTGCTCTGATATAACCACCATTCAAAAGTGGGAGTGAGAAATATATTGTTTTGCTGTACCCCTTCCGAGCGAGCGAGAAAGCTTGCTGAGAAATGTGGAAGTGGTCTCTCCACGGATGAACGAAGAAGTTCATATATCTAATGTCTCTTCAGCATTTGGCCTAGAAATGTCTGTTTGCAGCAGCATTTGGGTCAAGTATCATTTCAATGAGAACAACTAATCGGGTGATTTCAGTAACTAGGTTTGGTATTGAATCTCCATTTGCCACTTCAGAAATTACTTTTCTGATTGAATAGCCATCCGGTTCATTTCAGGGATCAGGTTTTGCCCTTTGGGTCAGTGCCAGGTCCTCCTAAAAGGGTAACTTTCTTCATATCTGGATGCTCGTTTCCTGAACTAGTCCCACGTCATCCTAAAAGAGTAACTTTCTTCATATCTGGATGCTAATTTGCTGAAATACATTTCAATTTTTGTTTCAAAAGATGGGCTTAGATTTTGTACACTGATGCTATTGACTGGTCTTATACACATAAGAA_-_ATGGAGAAGGTTGGAGATTTAATTGGATTAAAATCAATGCGAATAAACAATGGGAACGAAATTGCCAAAATGAGTACGTGCAAGGCTTTGATGTTCACTGGACCACTTGCTTCTCAAAATGTTGAATTTTTCGGCTTCACCCCAAAAGTTCTTAACATGCCACTGAAAAGGACTTTCAGAAGTGCATGTGTAAGGGCAAACACAAGCAGCAGCAGCAGTACAGAACAAAACCCATCTTCCTCTCCTCCCAAGCAGAAGAGTCAATTGCTAGCAATACTTGACCTCCCTAGTACTGTGTGGAGGCAGACACTTAATCCCCTTAGTAACTTTGGATTTGGCAAGAAGAGCATTCGAGAGGCGGGCGTGGGATTGTTTATGATATCAGGGGCTGTCCTGCTTGCTTTTACAGTTGTTTGGCTGAAGGGTTTACAGCTTCGATCTCGGTTCAAGAAGTACCAGGCAGTGGTTGAATTTTCTCAAGCATGCGGACTTACAGTTGGGACGCCAGTTAGAATCCGGGGATTTACTGTTGGGAGCGTTGTTCAGGTCAGGCCGAGTCTCGAGAAAATTGACGCTGTAATCCAGGTTGTGGATGAGAAAGTTGTTATTCCTCGCAATTCATTGGTTGAAGTGAATCAGTCTGGTCTTCTTATGGAAACTCTTATTGATATCACACCACGCCCTCCTGTTCCTACACACGCAGTAGGTCCTCTTGACCCTAACTGCAATAAAGAAGGGCTAATTGTTTGTGACAGAGAGAGGATAAAAGGAGAGCAGGGTGTAAGCTTGGATGAACTAGTTGGGATTTACACCAGGCTGGGTCGGCAAATGGATGAAATAAGTGTTACCAAAACATATGATTTGGCAGAAAGGGTTGCTTCAACTGTAGAGGAAGCGAGGCCTCTTCTTGCAAAGATCGAAGCAATGGCTGGGGATATTCAACCATTGTTGAGGGAGGTTCATGAGGGTGGGTTGCTGAAGGAGATTGAGCGCTTGACAAGGGTCCTTGCAGATACAAGTGGAGACTTGAGAAAATTGAATTCCTCAATTTTGACCCCAGAGAACACGCAGTTGCTTCGTCAATCAGTCTCCACCCTAATAACGACACTAAAGAATATAGAGAGTATTAGTGGAGACATATCTGGAGTGACAGGGGATGCAGCTACCAGAAATAACTTGAAGCTACTGATTCAATCTCTCAGCAGGCTTCTTTTAGATTAG___AGGCAATATATTATTTATTGGGAGGCTTCGACTGTTTTTACCAGTGATTAATAAGCATGTTTAGACGTGTAAGTGCAGAATTTGTTAATAAGAAAACCAAGAAAGCTAGAGAGTACTCTAATACCATTATTAGAATTGTTCATGACTTGCTGTAAATTGTATGAAATAACATGTAATATCACAACGGAGCTAATAAATTTAAAAGTTTGTTAAACCAAGCAATGTACCACTTTAGGATTAAGCCCATACGGTCTTTCAGAGCTTTTATAATGACATTTATCCAAGCAGAATACATGGAGCATGGCAATCCACTTCTATTCACCTTAATAGGAAGTTGAAACTAATAATTCGCTAGAGTACTCTATGAGAATATACTTTTATCATTCAGTGTTGTTTAGCACTATTATCCTCTAGTAACCATGCCATTGATATCCTTCTTTGCACATTAGGTGTGATGGCTTGTTTTGCGAACATTCCTTTCATCCTGTGCGAATGCATATAGTTGCATTTCATCCATTTAATTTTTACAAGTTATTTTCTTCTTTACTAAT

Fln Alignment:

sp_v1.1_unigene4878___MDEISVTKTYDLAERVASTVEEARPLLAKIEAMAGDIQPLLREVHEGGLLKEIERLTRVLADTSGDLRKLNSSILTPENTQLLRQSVSTLITTLKNIESISGDISGVTGDAATRNN
B8LPK5______________MDEVSVTKTYDLAERVASTIEEARPLLAKIEAMAGDIQPLLREVHEGGLLKEIERLTKVLADTSGDLRKLNSSILTPENTQLLRESVSTLIMTLKNVESISGDISGVTGDAATRHN

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
215	85		14		0.993533
253		14		85	0.993533
359		57	42		1.0
503	14			85	0.993533
507	85		14		0.993533
508			14	85	0.993533
522			12	87	0.992554
525	87			12	0.992554
528	87	12			0.992554
529	87	12			0.992554
532	87		12		0.992554
536		12		87	0.992554
537	12			87	0.992554
540	12		87		0.992554
562		12		87	0.992554
606		87	12		0.992554
665		80		20	0.995493
693	40		60		1.0
1681	88		11		0.923564
1964		10		89	0.999919
1965	89		10		0.999919
1966	89			10	0.999919
1968			10	89	0.999919
1972	89	10			0.999919
1973		10	89		0.999919
1974		89		10	0.999919
1976	88		11		0.999937
1981		11		88	0.999937
2110		85	14		0.993533
2111	85			14	0.993533
2112	85	14			0.993533
2114	85			14	0.993533
2115	85		14		0.993533
2117		14	85		0.993533
2120	85			14	0.993533
2122	85		14		0.993533
2123		14	85		0.993533
2124	85			14	0.993533
2250	25			75	0.996473
2322		75		25	0.996473
2334	25	75			0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
994	1007	AGC AGC AGC AGC AG	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain