SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4866

Length: 617 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene4866 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF3054 domain containing protein	-	-	2.0e-17	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	protein	-	-	0.0	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF3054	IPR021414	-	0.0	75%

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
92	71	14			0.984337
569	51		48		1.0
588	71	28			1.0
589	14	14			0.999974
590	64	28			1.0
591	78	21			1.0
592	78	14		7	0.999974
594		66	8	16	0.999991
595	10			90	0.90298
596		10	90		0.90298
598	20		80		0.999996
599		10		90	0.90298
600		11	88		0.923564
601	88	11			0.923564
603	88			11	0.991528
607	87	12			0.992554
608	88	11			0.923564
609		11	88		0.923564
610	11		88		0.991528

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain