SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4855

Length: 1169 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4855

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	similar to DnaJ-like protein	-	-	4.0e-16	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	protein	-	-	0.0	58%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heat shock protein DnaJ, N-terminal	IPR001623	-	0.0	58%
Blast2go	Heat shock protein DnaJ	IPR003095	-	0.0	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PS62

Fln msg:

Fln protein: MASSLVFSSNVFEFPSTGHIGVQRPPAGSSTRSTHVRFRRCFKARAVQASVGAESAISNHGHMESRNLYEVLAVSPSATAKDIKRAYRKLAREFHPDHAASPEDKNESTQMFLRIHNAYVTLSDPHERAQYDRQFWAPLRGFTGQTWNKAANGRTPAYTNYGHMGRSWESDQCW*

Protein Length: 176

Fln nts: ATGGGGAATTCATCGGCAATCCTCACTGAAAACCGTTGCCCACGTGAAAATAGACCGACCAACTAGTCTGATGTTTAATTTTTAACAAATTTCTCAACTTTTCCAAAAGCTAAGAGGAATCACACGCGGCTTCGCCACATTCAGATCTATTCTCAGGGAGATATTTTATTTGACAGCTATCCCCTCTGCTGTGCAACTTTCTGGGCTTCGTTTGTGTATATAATTACAACCCTAGTCATATTGAAAGGCCTGTATATTCTTCATACTTTCATCAATTTCCCTTCTGCAAATCTGCTCTGTCTAGTGATAGTATAGAATTAAAAACCTTCGTTTTTTTGTAAAGGCCAGTATATATTCCTCTGCTTTTTTCAATATTTCTTCTGCAAATCTGCTCTGTTTAGTAATAGTTTTATTGATCAATCATCCAGACTTCGTTTATCCATAGTTTTTGCGAGCGATTATTCAGTATATATACCCTATAGCTTTGTTTCTGGGAGAAAAAAAATTATATAGCAATA_-_ATGGCTTCTTCTCTTGTATTTTCTTCTAATGTTTTCGAATTTCCAAGCACTGGTCATATTGGCGTCCAGAGACCGCCTGCAGGATCCAGCACCCGGAGCACTCACGTTAGATTTCGGCGGTGTTTCAAGGCCAGAGCAGTGCAGGCCTCTGTGGGCGCAGAGTCAGCCATCTCAAACCACGGTCACATGGAATCAAGGAATCTTTATGAAGTTCTGGCAGTAAGCCCCTCAGCGACTGCAAAGGATATAAAGAGGGCTTACAGAAAACTGGCGCGGGAGTTTCATCCGGATCACGCGGCTTCTCCTGAGGATAAAAACGAGAGCACCCAAATGTTTTTGAGGATACACAATGCGTATGTGACTCTCTCGGATCCACATGAACGCGCCCAATATGACCGCCAGTTCTGGGCACCATTGCGGGGCTTTACCGGCCAGACGTGGAATAAGGCGGCCAATGGGCGGACGCCCGCTTATACAAATTATGGTCATATGGGGCGGAGTTGGGAATCAGATCAGTGCTGGTGA___TCTTCATCTGTATTGTGGATTTTTCGTGGATATTATGTACATACTTAACTGTATGAGATACGATGTACATACTTAACTGTATGAGATACTGTATATTTGTATTTTTCTAACATGCATATATAATTC

Fln Alignment:

sp_v1.1_unigene4855___MASSLVFSSNVF---EFPSTGHIGVQRPPAGSSTRSTHVRFRRCFKARAVQASVGAESAISNHGHMESRNLYEVLAVSPSATAKDIKRAYRKLAREFHPDHAASPEDKNESTQMFLRIHNAYVTLSDPHERAQYDRQFWAPLRGFTGQTWNKAANGRTPAYTNYGHMGRSWESDQCW
C0PS62______________MASSLVFPSNVLSSNESPSAGHMGFQRPPAGSSTRSTNLRFRRCFKMRAVQASVGAEAAISDQRHMESRNLYEVLAISPAATAKDIKRAYRKLAREFHPDHAASPQDKNESTQMFLRIHNAYVTLSDPHDRAQYDRQLLASVQGFTGQTWSKATNGRSPTYKYYGHMGRSWESDQCW

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
245	50		16	33	1.0
246	50		50		1.0
249		50	50		1.0
260		50		50	1.0
269	50			50	1.0
299		40	60		1.0
513	80		20		0.995493
515		80	20		0.995493
524	12	87			0.992554
526			12	87	0.992554
527		87	12		0.992554
528			12	87	0.992554
787		90		10	0.90298
807	12		87		0.992554
1057	28			71	1.0
1119	63		36		1.0
1129	18		81		0.999994
1142			16	83	0.994512
1143			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain