SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4823

Length: 1972 nt

Origin of reads: Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene4823
CGTCGTGACCTTGGCTGTCACTCAAACTGGCAGATATCAATCCTTGTGCTTGACAAGTCAGGATCGCAAAGAATCCATCAGAATTGGAGCTGTACGTGGTTGCTTGGAATTCTTGTGCTCGACGTGCCACTTGAAGGACCACAGCCAATCAATCAGACTAGGAGGTTTATGTTGCTTGGAGTTTTTGGTAAAAATGCATAAGGATTCAAAGATATGTATGCTTTTAGCCCTCATATGGATTGCAACAGTATATGCTGAATCAGTCATTGTCACGCCTACGGAGTCAAATGAAAGAAAACTCAAGTCTGCAGTTTTCAGATCTCCAGCATTTGTTCTGGGACCTGGGCAGGTTCAGAATAAAAATATATCTCAGTATTGATTTTCCAAAAAGGCCATATTGCTCTCAAGGGTTTTGATGCTGAGGTTGTAGATGAAGGGGGGAACTCAATTCCTTTATATGAGACCTACTTACATCACTGGCTGGTGGAAAGGCTTTACCGTAAAAAGCCCTTGACAGAAGAGAAAACCAAAACACAAACTAGGAGACTTCACAGTTCAAACTATATCATTGCAGGGAATGATGGTATTTGTCAGGATCACTCTCTTGGTCAAATATTTGGCCTTGGGTCTGAAACACGTCATACTAGCACCTTCATACCCGATCCATATGGTATTGTTGTCGGAGATCCTAAACAGATTCCTGAAGGATATGAAGTGGATTGGATGCTGAATGTGCATGCCATTGATACAAGAGGGGTTGTAAATTCACTAGGTTGTACAGAATGCAGATGCAACCTTTACAATGTAACTAAAGATGAATATGGTCGTCCACTAAGAGAAAATTATATTGGAGGTCTATATTGTTGTTATGAAGGGACGCAATGTCAACTAAAAGAGGGCTTTCAAGGAGAGAATAGGACACTCTACTTGAAATACACTGTGTATTGGATGAACTGGGATGAAAGTATTGTCCCAGTTAGAACATATATCCTTGATGTTACAGATACTGGAGAGCGGTCTAATGGTTCATCAAGAGGTGTTGGTTGCCAGGTTGAATATGATGTTGCACCATGCTCTGCTGGAAGTCCTCCTAGTGAATGCATTGACACTCGGGAAGCACACATGGCTATACCACGAGGGGGGGATGTCATTTATGGTGTTGCACACCAACATACTGGAGGACTTGGTTCGGTACTTTATGGTCAAGATGGTCGAGAGATTTGTTCATCCTTACCACTTTATGGTCAAGGAAGCGAGCCCGGTAATGAAACTGGTTATGTCGTTGGAATGAGCACATGTTATCCTGAGCCTGGAAGTGTAAAGATTTATAATGAAACTCTGAAATTACAGGCCAAATACAGCAGCGAAATCAGGCACACAGCGTGTTATGAATCTGTTCTATCTTCTCATAGCAGACTCTGTACACGACGTTTCTGTCACCTCTTATTGAGAGTATATTGTCTTTCAAAACTTGTGTTCTTTCTGCCTTAAGATGTCTAGATTTAGTTTTGTCTACTTGTGGAATAATTTTCTCAACTTTTCAAAGAGGTCATATTTCCATAGAGCAACAATTGCAAAATGCCCTTGACAAGGTAGGAACATGGAAGACTCAGTTCATGCAAACAAGGTTCTTCCATCTTGCTTGTGACTGCTCTCTCTGTTTTTTTCTGGAACAAGTTTCTTCTATTTTGTGAGGAAGGGACATGAAAATGGTTATGGGACTCTTTGGACTTGAAAGGCTATAAATTGTACCATGCTCTTTTGAGGCTTGAAGTACATCAGAGCCTAGACTTTCTTCTATTGGCTGACATAAGAACTGGATTTCTGTCATGTTTTTCAATTCCACTGTGTATATTTATGGCATAAATTAGGAAATTACCAAGGGCTAGTTATTAATACTATGTCTCCCTCCCTTTTCTATCTTCCATGTATTTTTAATCTAAATATTATCATTAACAGTTATGTTTTGACT

Ace file of the UniGene sp_v1.1_unigene4823

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	MtN19-like protein n=1 Tax=Pisum sativum RepID=Q64EX4_PEA	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	60%
Blast2go	19-like protein	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Stress up-regulated Nod 19	IPR011692	-	0.0	70%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: B9RA49

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 38 aas, putative chimeric sequence, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 377 - 467

Fln protein: KYISVLIFQKGHIALKGFDAEVVDEGGNSIPLYETYLHHWLVERLYRKKPLTEEKTKTQTRRLHSSNYIIAGNDGICQDHSLGQIFGLGSETRHTSTFIPDPYGIVVGDPKQIPEGYEVDWMLNVHAIDTRGVVNSLGCTECRCNLYNVTKDEYGRPLRENYIGGLYCCYEGTQCQLKEGFQGENRTLYLKYTVYWMNWDESIVPVRTYILDVTDTGERSNGSSRGVGCQVEYDVAPCSAGSPPSECIDTREAHMAIPRGGDVIYGVAHQHTGGLGSVLYGQDGREICSSLPLYGQGSEPGNETGYVVGMSTCYPEPGSVKIYNETLKLQAKYSSEIRHTACYESVLSSHSRLCTRRFCHLLLRVYCLSKLVFFLP*

Protein Length: 378

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACTGGCAGATATCAATCCTTGTGCTTGACAAGTCAGGATCGCAAAGAATCCATCAGAATTGGAGCTGTACGTGGTTGCTTGGAATTCTTGTGCTCGACGTGCCACTTGAAGGACCACAGCCAATCAATCAGACTAGGAGGTTTATGTTGCTTGGAGTTTTTGGTAAAAATGCATAAGGATTCAAAGATATGTATGCTTTTAGCCCTCATATGGATTGCAACAGTATATGCTGAATCAGTCATTGTCACGCCTACGGAGTCAAATGAAAGAAAACTCAAGTCTGCAGTTTTCAGATCTCCAGCATTTGTTCTGGGACCTGGGCAGGTTCAGAATAAAAATATATCTCAGTATTGATTTTCCAAAAAGGCCATATTGCTCTCAAGGGTTTTGATGCTGAGGTTGTAGATGAAGGGGGGAACTCAATTCCTTTATATGAGACCTACTTACATCACTGGCTGGTGGAAAGGCTTTACCGTAAAAAGCCCTTGACAGAAGAGAAAACCAAAACACAAACTAGGAGACTTCACAGTTCAAACTATATCATTGCAGGGAATGATGGTATTTGTCAGGATCACTCTCTTGGTCAAATATTTGGCCTTGGGTCTGAAACACGTCATACTAGCACCTTCATACCCGATCCATATGGTATTGTTGTCGGAGATCCTAAACAGATTCCTGAAGGATATGAAGTGGATTGGATGCTGAATGTGCATGCCATTGATACAAGAGGGGTTGTAAATTCACTAGGTTGTACAGAATGCAGATGCAACCTTTACAATGTAACTAAAGATGAATATGGTCGTCCACTAAGAGAAAATTATATTGGAGGTCTATATTGTTGTTATGAAGGGACGCAATGTCAACTAAAAGAGGGCTTTCAAGGAGAGAATAGGACACTCTACTTGAAATACACTGTGTATTGGATGAACTGGGATGAAAGTATTGTCCCAGTTAGAACATATATCCTTGATGTTACAGATACTGGAGAGCGGTCTAATGGTTCATCAAGAGGTGTTGGTTGCCAGGTTGAATATGATGTTGCACCATGCTCTGCTGGAAGTCCTCCTAGTGAATGCATTGACACTCGGGAAGCACACATGGCTATACCACGAGGGGGGGATGTCATTTATGGTGTTGCACACCAACATACTGGAGGACTTGGTTCGGTACTTTATGGTCAAGATGGTCGAGAGATTTGTTCATCCTTACCACTTTATGGTCAAGGAAGCGAGCCCGGTAATGAAACTGGTTATGTCGTTGGAATGAGCACATGTTATCCTGAGCCTGGAAGTGTAAAGATTTATAATGAAACTCTGAAATTACAGGCCAAATACAGCAGCGAAATCAGGCACACAGCGTGTTATGAATCTGTTCTATCTTCTCATAGCAGACTCTGTACACGACGTTTCTGTCACCTCTTATTGAGAGTATATTGTCTTTCAAAACTTGTGTTCTTTCTGCCTTAA___GATGTCTAGATTTAGTTTTGTCTACTTGTGGAATAATTTTCTCAACTTTTCAAAGAGGTCATATTTCCATAGAGCAACAATTGCAAAATGCCCTTGACAAGGTAGGAACATGGAAGACTCAGTTCATGCAAACAAGGTTCTTCCATCTTGCTTGTGACTGCTCTCTCTGTTTTTTTCTGGAACAAGTTTCTTCTATTTTGTGAGGAAGGGACATGAAAATGGTTATGGGACTCTTTGGACTTGAAAGGCTATAAATTGTACCATGCTCTTTTGAGGCTTGAAGTACATCAGAGCCTAGACTTTCTTCTATTGGCTGACATAAGAACTGGATTTCTGTCATGTTTTTCAATTCCACTGTGTATATTTATGGCATAAATTAGGAAATTACCAAGGGCTAGTTATTAATACTATGTCTCCCTCCCTTTTCTATCTTCCATGTATTTTTAATCTAAATATTATCATTAACAGTTATGTTTTGACT

Fln Alignment:

sp_v1.1_unigene4823___FQKGHIALKGFDAEVVDEGGNSIPLYETYLHHWLVERLYRKKPLTEEKTKTQTRRLHSSNYIIAGNDGICQDHSLGQIFGLGSETRHTSTFIPDPYGIVVGDPKQIPEGYEVDWMLNVHAIDTRGVVNSLGCTECRCNLYNVTKDEYGRPLRENYIGGLYCCYEGTQCQLKEGFQGENRTLYLKYTVYWMNWDESIVPVRTYILDVTDTGERSNGSSRGV----GCQVEYDVAPC-SAGSPPSECIDTREAHMAIPRGGDVIYGVAHQHTGGLGSVLYGQDGREICSSLPLYGQGSEPGNETGYVVGMSTCYPEPGSVKIYN-ETLKLQAKYSSEIRHT
B9RA49______________FPRGHIFIKSFNAEIIDEAGNPIPLYETYIHHWVVSRYYQR---TNASVAENSRR---PDRIPAGNSGICQAHVLGQYFGLGSETRKTDTHVPDPYGIEIGNPAEIPQGYEERWVLNIHAIDTRGVQDRLGCTECKCDLYNVTVDEYGDPLRPEYKGGLLCCYDRTQCKVKQGFQGARRSLYLRYTVKWVDWDSTIIPVKIFIFDVTDTGKRLNGSS-GISPQNGCQIEYEVKSCNAAGVAVDGCTDVKRTSLTMPTGGYVIYGVAHQHTGGTSSTLYGQDGRVICTSLPIYGEGKEAGNEAGYIVGMSTCYPKPGSVKIADGENLTLESNYSSTQTHT

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
702		75		25	0.996473
826		25		75	1.0
1171	83		16		0.994512
1192	16		83		0.994512
1217	14		85		0.993533
1221	14			85	0.993533
1247		80		20	0.995493
1255		80		20	0.995493
1366		25		75	0.996473
1369	80	20			0.995493
1370	80		20		0.995493
1373	80		20		0.995493
1374			80	20	0.995493
1379	80	20			0.995493
1380		80		20	0.995493
1381	80			20	0.995493
1388		20		80	0.995493
1390		20		80	0.995493
1391			80	20	0.995493
1392	80	20			0.995493
1395		80		20	0.995493
1426	71		28		1.0
1427		71		28	1.0
1431		28	71		1.0
1434			33	66	1.0
1452	77	11	11		0.968132
1453		11	88		0.923564
1454	55	11	22	11	0.999999
1458		22		77	0.999999
1459	77	11		11	0.968132
1460		11		88	0.923564
1461	11			88	0.923564
1463			11	88	0.923564
1466			11	88	0.923564
1470	88	11			0.923564
1471	88			11	0.923564
1474	11			88	0.923564
1512		10		90	0.90298
1524		10	90		0.90298
1526	90	10			0.90298
1538	50		50		1.0
1658		88		11	0.923564
1659		11		88	0.923564
1780	92			8	0.999718
1864	72		27		1.0
1896	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain