SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4809

Length: 1545 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene4809 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	metallo-beta-lactamase family protein	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to arsenic-containing substance	GO:0046685	Biological Process	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P038

Fln msg:

Fln protein: MDILVNTVGVGVLHKHHQRPISPFGSFFNCTPRRISVTCASTAVTKTTTTAPHPPTLKHKRPQNVEGDLYVNHTCIDCDVCRWMAPETFSRVDGQSAVYKQPDSAEERTAALQALLSCPVGSIRTEKPPSDILQVHSTMPLSIDEKCLPGVYHCGYHSKKSYGAASYLIKHPKGNILVDSPSFKEKLASKIDELGGARYMFLSHRDNVADHDKWAKRLSCDRILHINEVQSHTADVEIKLEGQGPWSLNPDVDLIFTPGHTEGSVSLFYKPLKALFTGDHLAASHNGELTYFEKYNWYSVEKQVENIRPFLQMDFLWILPGHGRRMKFENINEKNAAIEKLLSGVGLLQLV*

Protein Length: 353

Fln nts: ATGGGGGAAAGAAAAACTGGCCATAAAGTTTAAACCTGTAAATACTTGCATCTAAGCATAAAGGGCACAGCACCAACATTTCATCCGGATCCAAAGGCTTCAGTCAGCAACAAC_-_ATGGACATACTGGTGAATACTGTTGGTGTTGGTGTTCTGCATAAACACCACCAGCGTCCAATTTCTCCCTTCGGTTCATTCTTCAATTGTACACCGCGCAGAATCTCAGTTACCTGTGCATCAACTGCTGTAACGAAAACTACAACAACTGCTCCTCATCCTCCAACTTTAAAGCACAAACGCCCACAAAACGTAGAGGGGGACTTATACGTCAACCACACATGCATAGACTGCGATGTATGCCGGTGGATGGCTCCTGAAACTTTCAGCAGAGTCGACGGTCAGTCGGCAGTGTATAAACAACCAGACTCTGCAGAAGAAAGAACAGCTGCTCTCCAGGCTTTGCTATCTTGTCCAGTAGGATCAATACGTACCGAGAAGCCTCCATCTGATATTTTACAAGTGCACTCAACTATGCCTCTTTCGATTGATGAAAAATGTCTTCCAGGTGTTTACCACTGTGGTTACCATTCAAAGAAGTCCTATGGAGCAGCTTCATACTTGATCAAACATCCAAAGGGAAACATACTTGTAGATAGCCCGAGCTTTAAAGAAAAACTTGCAAGCAAAATAGATGAACTTGGCGGGGCTCGCTACATGTTCCTTTCTCACAGAGATAACGTTGCTGACCATGATAAATGGGCTAAGCGTTTATCTTGTGACCGCATATTGCATATTAATGAGGTACAATCTCATACTGCAGATGTAGAAATAAAACTTGAAGGCCAAGGACCATGGAGTCTTAATCCTGATGTTGATCTTATTTTTACACCTGGGCATACTGAGGGATCTGTCTCTCTTTTTTATAAGCCTCTCAAGGCCCTATTCACGGGGGATCATCTTGCAGCGTCACATAATGGTGAATTGACTTATTTTGAGAAGTATAACTGGTATTCAGTGGAAAAACAAGTGGAGAACATCCGTCCTTTTCTGCAAATGGACTTTCTCTGGATTTTGCCAGGTCATGGTAGGAGGATGAAATTTGAGAATATTAATGAAAAAAATGCAGCAATTGAAAAACTGCTTTCAGGTGTTGGTCTTTTACAATTAGTTTGA___TCTTGGCATTGAAAAGGATCAACAAAAGTATTTATATGGGAATACAGTCATAATAACAAGGAAATGTCCCCCAAAGCATTGGATTTACTGATGCAAAATACCTGTACATACTACAGAGAATATTGGTGCACTTAAGTATATGTGTGGCTGTATTGAACTTACTGAATTTGTGTATCCATATACATGAGGCTATATTGAACTTACTAAATATGTGTATTCATATTCGTGAAAATCCATCATAAGATCTGCACTGTTGGGAATGTATCCTTATATAGAAAGTACTGAACATAAAGAATATGTACATTCAGTCCATCCAAAAGAATGCTTTCACTGTGATTTTTGAGAATGGTGAATGAAATTTGTATATTATATGGT

Fln Alignment:

sp_v1.1_unigene4809___MDILVNTVGVGVLHKH-----HQRPISPFGSFFNCTPRRISVXXXXXXXXXXXXXXXXXXTLKHKRPQNVEGDLYVNHTCIDCDVCRWMAPETFSRVDGQSAVYKQPDSAEERTAALQALLSCPVGSIRTEKPPSDILQVHSTMPLSIDEKCLPGVYHCGYHSKKSYGAASYLIKHPKGNILVDSPSFKEKLASKIDELGGARYMFLSHRDNVADHDKWAKRLSCDRILHINEVQSHTADVEIKLEGQGPWSLNPDVDLIFTPGHTEGSVSLFYKPLKALFTGDHLAASHNGELTYFEKYNWYSVEKQVENIRPFLQMDFLWILPGHGRRMKFENINEKNAAIEK
A9P038______________MDMLVNTGGV--VHKRLYVLQQQRPISHFGSFSNCTPRQLTVTCASTAVTTPTTAAPHPPTLKHKRPQNVEGDFYVNHKCIDCDVCRWMAPETFGRVDGQSAVYKQPYTAEERTAALQALLSCPVGSIRTEQPPSDILQVHSTMPLSIDEKSLPGVYHCGYHSKKSYGATSYLIKHPKGNILVDSPSFKEKLASQIDELGGARYMFLSHRDDVADHDKWARRLSCDRILHINEVQSHTADVEMKLEGQGPWSLDPDIDLIFTPGHTEGSVSLFYKPFKALFTGDHIAASHNGELNYFEKYNWYSVEKQVENIRPFLQMDFLWILPGHGRRIKFENINEKNAAIEK

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
713	87		12		0.992554
768	16	83			0.994512
771	14			85	0.993533
778	85		14		0.993533
781	85		14		0.993533
1185		88	11		0.923564
1187		88	11		0.923564
1188		88		11	0.923564
1190	11		88		0.923564
1193			11	88	0.923564
1194	88	11			0.923564
1197	11			88	0.923564
1198		88	11		0.923564
1203	11			88	0.923564
1205			11	88	0.923564
1285		56		43	1.0
1310	53			46	1.0
1324		46		53	1.0
1338			86	13	0.999973
1413		11	88		0.999952
1414		11		88	0.999952
1417	11			88	0.999952
1429	6	31		62	1.0
1461		28	71		1.0
1462		28	71		1.0
1482		50	50		1.0
1484	50	50			1.0
1486	50			50	1.0
1489	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain