SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4806

Length: 2340 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene4806
ATGGGGAGTGTGCTTCTTCGATTGGGGTTGTCCAGAGCACGGCATGTGAAGGAGCACTAGATATTGCAGTATCGTCATCGGTAAAAGGTTCCGCACAAGATTTTCGAATTCTGTGTTTTGTCCGGTATCTGGCGGTGGCCGATTTGCCAGTATTTCGTTGCGCGAGCTGATGTTCCCACAGAGAAGGGTTTGGATATAATTCGCTATCCGAAATTTCTTGATTTTGAAGAATTTTGCTGATAACTCGGACTTTGGGTTCTTTAATCCAGAATTCCAATCATTTACAGTTAATTGAGATCCGTTGGACTGGCGATTGAAGGAGATATATTTTGTTTTTATCAAGCGCTTCTTTTGAATTCCACAAACGTTACACCTGGCCCGGCACTATATGCAGGTCCGAGGGATACCGTTTATGCCTATGGTTCCCATCGTTTCTTCGTGCTTCCAATCGAATCGAACCTTGGTGGATTGCTTGGTACGTCACTGCCTTCACCGCTGAACCACGCCCCCATTCGCCGTCGAAAGAAAAAGCTGAGATGAAGTCGAGGAAGACGGTGACACGGAAGGTCGGAAAGTATGAGGTGGGGAGGACAATTGGCGAGGGCACCTTTGCGAAGGTGAAATTTGCGCAGAATATGGAGACCGGAGAGAGCGTGGCCATGAAAGTGCTCGACAAAGGCACCATACTTAGGAATAGAATGGTAGACCAGATTAAACGGGAAATATCTATAATGAAGATTGTGAGGCATCCGAATATTGTTTGCTTGCGTGAGGTTTTAGCAAGTCGGACGAAGATATATATTATCTTGGAGTTTGTGACAGGAGGCGAATTATTTGATAAAATTGTACATCAAGGAAGGCTGAACGAGGATCATTCACGGAGATATTTTCAACAACTTATAGATGCTGTTGATTATTGTCACATCAAGGGTGTTTATCATAGAGATTTGAAGCCTGAAAATCTTCTCCTGGACTATCGGGGAAACTTGAAAATTTCAGATTTTGGATTAAGTGCCTTGCCTCAGCAAAGAGATGAATTGTTGCACACAACCTGTGGAACACCAAATTATGTAGCACCTGAGGTTCTTGGGCGCAATGGCTATGATGGTGCAGCAGCAGATATCTGGTCTTGTGGAGTAATACTTTATGTGTTAATGGCGGGATATCTTCCATTTGATGAGGCTGATCTTACGAGCCTATATAGAAAGATCAACGCGGCAGACTTTTCTTGCCCAAACTGGTTCTCTGGTGATGCTCGGTCCCTAATATCTAGAATTCTTGATCCAGATCCCCAGACACGCATAAAAATCACAGAAATCCGGGCAAATGAGTGGTTTAGGAAGAATTATATACCAGTGAAACTTTATGAAGATGAGAACATCAACCTGGATGATGTACTTGCAGTTTTTAATGATGCAGAGGAGCAATATGTAAGTGAGCAAATAGAGGAAAAAGACACAGGTCCATTGATGATGAATGCATTCGAGTTGATAACATTATCCCAAGGGCTTAATTTGTCAGCATTGTTTGACAGGCGACAGGATTATGTTAAGCGCCAAACAAGGTTCATCTCTAGAAAACCGGCAAAAGTTATTATATCCAAGATGGAATCTGCTGCAGCATCTCTGGGCTTCAGGAATCAGACTCGCAATTACAAGATGAGACTGGAGGGGCTTACTTCAAACAAGACTGGACAAATTGCTGTTGCTTTAGAGGTTTTTGAGGTTGCTCCTTCTGTCTTCATGGTTGAAGTGCGCAAGGCTGTTGGTGACACTCTGGAATATCACAAGTTCTACAAAAATTTCTGTGCCTGTTTGGCGGACATCATTTGGAAGCCAGTTCGTGAGGCTGAAAAATCGGAACAGGTATGAGCACATAGTCACTGAACAGTTCACAGGCATATAGTGTCAACAAAGATCTTGTAAGATTTCTGTAAATCTTCTGTTGATTTATAATGATAGTCTGGCAACACTCTGGAAGGAGCTTTTTCTATATCATTGGGTAGGTCGAGCATATCATCGTTTCATGCTATTTTGTACTAATAGGCATACTAGTAACACATCAAACTTGAAAGCCAAGATTATCGGCGGTGAAGGCGATTCTTCATTGTGGCTTTCCCTCCATGTAATGATTATTCCGTTTGGAGACTGTCTGATGTACGGAGAGATTCTGAATATTATATCCTGCGGAGTAAGCATATAATAAGGCATTATCCCCGGAGAAGATCTGTTGTACCAGCCACAGAGCAGCAATGTAACTATCAGTCTTGTGAATTTTGTAACTATAACTATTTAATTGTTTATACTTAATTTGATGAGAAAAGAGCCTTGTTAAGTCCCC

Ace file of the UniGene sp_v1.1_unigene4806

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CBL-interacting protein kinase 09 n=2 Tax=Vitis vinifera RepID=A5BZV3_VITVI	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	cbl-interacting serine threonine-protein	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	84%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	84%
Blast2go	protein binding	GO:0005515	Molecular Function	84%
Blast2go	plant-type vacuole membrane	GO:0009705	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	84%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	84%
Blast2go	NAF domain	IPR004041	-	84%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	84%
Blast2go	Protein kinase-like domain	IPR011009	-	84%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	84%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	84%
Blast2go	NAF/FISL domain	IPR018451	-	84%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWP7

Fln msg:

Fln protein: MKSRKTVTRKVGKYEVGRTIGEGTFAKVKFAQNMETGESVAMKVLDKGTILRNRMVDQIKREISIMKIVRHPNIVCLREVLASRTKIYIILEFVTGGELFDKIVHQGRLNEDHSRRYFQQLIDAVDYCHIKGVYHRDLKPENLLLDYRGNLKISDFGLSALPQQRDELLHTTCGTPNYVAPEVLGRNGYDGAAADIWSCGVILYVLMAGYLPFDEADLTSLYRKINAADFSCPNWFSGDARSLISRILDPDPQTRIKITEIRANEWFRKNYIPVKLYEDENINLDDVLAVFNDAEEQYVSEQIEEKDTGPLMMNAFELITLSQGLNLSALFDRRQDYVKRQTRFISRKPAKVIISKMESAAASLGFRNQTRNYKMRLEGLTSNKTGQIAVALEVFEVAPSVFMVEVRKAVGDTLEYHKFYKNFCACLADIIWKPVREAEKSEQV*

Protein Length: 446

Fln nts: ATGGGGAGTGTGCTTCTTCGATTGGGGTTGTCCAGAGCACGGCATGTGAAGGAGCACTAGATATTGCAGTATCGTCATCGGTAAAAGGTTCCGCACAAGATTTTCGAATTCTGTGTTTTGTCCGGTATCTGGCGGTGGCCGATTTGCCAGTATTTCGTTGCGCGAGCTGATGTTCCCACAGAGAAGGGTTTGGATATAATTCGCTATCCGAAATTTCTTGATTTTGAAGAATTTTGCTGATAACTCGGACTTTGGGTTCTTTAATCCAGAATTCCAATCATTTACAGTTAATTGAGATCCGTTGGACTGGCGATTGAAGGAGATATATTTTGTTTTTATCAAGCGCTTCTTTTGAATTCCACAAACGTTACACCTGGCCCGGCACTATATGCAGGTCCGAGGGATACCGTTTATGCCTATGGTTCCCATCGTTTCTTCGTGCTTCCAATCGAATCGAACCTTGGTGGATTGCTTGGTACGTCACTGCCTTCACCGCTGAACCACGCCCCCATTCGCCGTCGAAAGAAAAAGCTGAG_-_ATGAAGTCGAGGAAGACGGTGACACGGAAGGTCGGAAAGTATGAGGTGGGGAGGACAATTGGCGAGGGCACCTTTGCGAAGGTGAAATTTGCGCAGAATATGGAGACCGGAGAGAGCGTGGCCATGAAAGTGCTCGACAAAGGCACCATACTTAGGAATAGAATGGTAGACCAGATTAAACGGGAAATATCTATAATGAAGATTGTGAGGCATCCGAATATTGTTTGCTTGCGTGAGGTTTTAGCAAGTCGGACGAAGATATATATTATCTTGGAGTTTGTGACAGGAGGCGAATTATTTGATAAAATTGTACATCAAGGAAGGCTGAACGAGGATCATTCACGGAGATATTTTCAACAACTTATAGATGCTGTTGATTATTGTCACATCAAGGGTGTTTATCATAGAGATTTGAAGCCTGAAAATCTTCTCCTGGACTATCGGGGAAACTTGAAAATTTCAGATTTTGGATTAAGTGCCTTGCCTCAGCAAAGAGATGAATTGTTGCACACAACCTGTGGAACACCAAATTATGTAGCACCTGAGGTTCTTGGGCGCAATGGCTATGATGGTGCAGCAGCAGATATCTGGTCTTGTGGAGTAATACTTTATGTGTTAATGGCGGGATATCTTCCATTTGATGAGGCTGATCTTACGAGCCTATATAGAAAGATCAACGCGGCAGACTTTTCTTGCCCAAACTGGTTCTCTGGTGATGCTCGGTCCCTAATATCTAGAATTCTTGATCCAGATCCCCAGACACGCATAAAAATCACAGAAATCCGGGCAAATGAGTGGTTTAGGAAGAATTATATACCAGTGAAACTTTATGAAGATGAGAACATCAACCTGGATGATGTACTTGCAGTTTTTAATGATGCAGAGGAGCAATATGTAAGTGAGCAAATAGAGGAAAAAGACACAGGTCCATTGATGATGAATGCATTCGAGTTGATAACATTATCCCAAGGGCTTAATTTGTCAGCATTGTTTGACAGGCGACAGGATTATGTTAAGCGCCAAACAAGGTTCATCTCTAGAAAACCGGCAAAAGTTATTATATCCAAGATGGAATCTGCTGCAGCATCTCTGGGCTTCAGGAATCAGACTCGCAATTACAAGATGAGACTGGAGGGGCTTACTTCAAACAAGACTGGACAAATTGCTGTTGCTTTAGAGGTTTTTGAGGTTGCTCCTTCTGTCTTCATGGTTGAAGTGCGCAAGGCTGTTGGTGACACTCTGGAATATCACAAGTTCTACAAAAATTTCTGTGCCTGTTTGGCGGACATCATTTGGAAGCCAGTTCGTGAGGCTGAAAAATCGGAACAGGTATGA___GCACATAGTCACTGAACAGTTCACAGGCATATAGTGTCAACAAAGATCTTGTAAGATTTCTGTAAATCTTCTGTTGATTTATAATGATAGTCTGGCAACACTCTGGAAGGAGCTTTTTCTATATCATTGGGTAGGTCGAGCATATCATCGTTTCATGCTATTTTGTACTAATAGGCATACTAGTAACACATCAAACTTGAAAGCCAAGATTATCGGCGGTGAAGGCGATTCTTCATTGTGGCTTTCCCTCCATGTAATGATTATTCCGTTTGGAGACTGTCTGATGTACGGAGAGATTCTGAATATTATATCCTGCGGAGTAAGCATATAATAAGGCATTATCCCCGGAGAAGATCTGTTGTACCAGCCACAGAGCAGCAATGTAACTATCAGTCTTGTGAATTTTGTAACTATAACTATTTAATTGTTTATACTTAATTTGATGAGAAAAGAGCCTTGTTAAGTCCCC

Fln Alignment:

sp_v1.1_unigene4806___MKSRKTVTRKVGKYEVGRTIGEGTFAKVKFAQNMETGESVAMKVLDKGTILRNRMVDQIKREISIMKIVRHPNIVCLREVLASRTKIYIILEFVTGGELFDKIVHQGRLNEDHSRRYFQQLIDAVDYCHIKGVYHRDLKPENLLLDYRGNLKISDFGLSALPQQ--RDELLHTTCGTPNYVAPEVLGRNGYDGAAADIWSCGVILYVLMAGYLPFDEADLTSLYRKINAADFSCPNWFSGDARSLISRILDPDPQTRIKITEIRANEWFRKNYIPVKLYEDENINLDDVLAVFNDAEEQYVSEQIEEKDTGPLMMNAFELITLSQGLNLSALFDRRQDYVKRQTRFISRKPAKVIISKMESAAASLGFRNQTRNYKMRLEGLTSNKTGQIAVALEVFEVAPSVFMVEVRKAVGDTLEYHKFYKNFCACLADIIWKPVREA
A9NWP7______________MRSRKTVMNKVGKYEIGRTIGEGTFAKVKFAQNTETGESVAMKVLDKGAILRHKMVDQIKREICVMKLVRHPNIVHLHEVLASRTKIYIILEFVTGGELFDKIVHQQRLSENESRKYFQQLIDAVDYCHSKGVYHRDLKPENLLLDSQGNLKISDFGLSALPQQLREDGLLHTTCGTPNYVAPEVLSHKGYDGALADVWSCGVILYVLMAGFLPFDEDDLTSLYRKINEADFSCPTWFSPGAKSLISRILDPDPQTRIKVSGIREDDWFRKNYVPVRLYEDDDVNLDDVQAVFDDSEDQYVSEQREAKELGPSMMNAFELITLSQGLNLSALFETQQDHVKRQTRFISRKPAKVIISKIESAVESMGFKIQVSNYKMRIEGLTLNKTGHISVALEVFEVAPSLYMVDVRKAAGDTLEYHRFYKALCAQLEDIVWKPINDS

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
354		20	20	60	0.99255
382		83	16		0.994512
413	20		80		0.995493
439	16	83			0.994512
480	16		83		0.994512
528	80		20		0.995493
556	87		12		0.992554
726	72	9			0.999994
1237		84		15	0.999986
1407		87		12	0.992554
1408		12		25	1.0
1826		7	92		0.999664
1997		33		66	0.997452
2061		33		66	0.997452
2087			22	77	0.999999
2153	90		10		0.90298
2340	66			33	0.997452
2341	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain