SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4795

Length: 1090 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4795

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Type IIIa membrane protein cp-wap13 n=1 Tax=Vigna unguiculata RepID=O24548_VIGUN	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	alpha- -glucan-protein synthase	-	-	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Alpha-1,4-glucan-protein synthase, UDP-forming	IPR004901	-	0.0	92%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKS5

Fln msg: your sequence is shorter than subject: 244 - 363

Fln protein: VVTLAVTQLFFNTLYDPYREGADFVRGYPFSLRHGTPTAVSHGLWMNIPDYDAPTQLVKPWERNTRYVDAVLTIPKGTLFPMCGMNLAFNRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCVKVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEDIIPFFQSLTLPQECTSVQQCYIELSKQVRNKLGVIDPYFQKLADAMVTWIEAWDELNPPTANRAAETEVIPRGPDKTSTN*

Protein Length: 245

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTATTTTTCAATACATTGTATGATCCATACAGAGAGGGCGCAGATTTTGTTCGTGGGTACCCCTTCAGCCTTCGCCATGGAACACCCACTGCAGTCTCTCATGGCCTCTGGATGAACATCCCTGACTATGATGCCCCCACACAGCTTGTCAAGCCTTGGGAACGCAACACCAGGTATGTGGATGCAGTTTTAACAATTCCAAAGGGTACTCTGTTCCCCATGTGTGGCATGAATTTGGCCTTCAATCGGGACTTGATTGGCCCTGCAATGTATTTTGGCTTGATGGGCGATGGGCAGCCCATTGGTCGCTATGACGATATGTGGGCAGGATGGTGTGTCAAGGTCATCTGCGACCACTTGGGATTGGGAGTGAAGACAGGGCTGCCATACATTTGGCACAGCAAGGCCAGTAACCCCTTTGTCAATTTGAAGAAAGAGTACAAGGGAATCTTTTGGCAAGAGGACATCATTCCATTTTTCCAATCTCTTACACTTCCACAGGAATGTACGTCTGTCCAGCAATGCTACATTGAGCTGTCAAAGCAGGTAAGGAACAAACTTGGTGTAATAGATCCATATTTCCAGAAGCTGGCAGATGCCATGGTCACTTGGATTGAAGCTTGGGATGAGCTCAATCCCCCCACTGCCAACCGTGCTGCAGAAACTGAAGTAATTCCCCGTGGACCAGATAAGACATCCACGAATTAG___CAAGGATCTGGCACATTAATCCCTTGCATTTGTCAGCTCTGAACAGTGCCCAATATTATTTAGTTCATCATCATTTTGGTAGATGGATAGTCTATTCTAGTTGATCTCTAGCTATTAGTTTCTTTTTATTGCAGTCAGATGAACATTTGTTGTGATGCAATAATTTTGAGAATCTGCATGCAGTATTTGCACGAATTTGTTTTTGATCCAGTTAGATGATAATGGACATCCCTGGAAACATCAGATATTTTTGAGAATATGCTTGGATCTAGTTAGATGATTATGGACATCCCTGGAAACATCAGATATTTTTGAGAATATATATGCTTGGCATCCGTTGCTGCTATTGAGAATAAC

Fln Alignment:

sp_v1.1_unigene4795___TQLFFNTLYDPYREGADFVRGYPFSLRHGTPTAVSHGLWMNIPDYDAPTQLVKPWERNTRYVDAVLTIPKGTLFPMCGMNLAFNRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCVKVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEDIIPFFQSLTLPQECTSVQQCYIELSKQVRNKLGVIDPYFQKLADAMVTWIEAWDELNPPTANRAAETEVIPRGPDKTS
A9NKS5______________TPFFFNTLYDPYRDGADFVRGYPFSLRHGTPTAVSHGLWMNIPDYDAPTQLVKPLERNTRYVDAVLTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCIKVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEEIIPFFQSATLPKECTSVQQCYIELSKQVKESLGKVDPYFQKLADAMVTWIEAWDELNPTASNAESNA---PNGAAKSA

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
729	85			14	0.993533
730	85	14			0.993533
731			14	85	0.993533
734		14	85		0.993533
736	85			14	0.993533
737	85			14	0.993533
740	85	14			0.993533
742		85	14		0.993533
744		14	85		0.993533
745	14		85		0.993533
747	85			14	0.993533
755		42		57	1.0
784		85		14	0.993533
803		85	14		0.993533
855		25		75	0.996473
857		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain