SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4765

Length: 2012 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene4765
CAACGAAGTCGGAAGAGTAATAAAACTGTATCTCTGGTCACGAAATGGGGATATTGGCTTTTCTACGGGCAAAGTCAATCCAGCTTGAATAGATATCTGAGGCAACCTGCTCCTCCAGCTCGACGATCGTTTGGAAGACCTGTCATCGGGAGCGCTTTACAGATCTCTATCATAAGGTGCAGAATGATTGCAGCAGTGTGTTGGGTTCCTAAGGGTGTTGCAAAGGTTCTACCAGATTCTGCTGAACCGCCTACTCAAGAGGAGATTCAAGAGTTATTGAAGTGTAACGTTGTAGCAGAGAGTGACGATAATGAAGATAGTGATGAAGAAAATGAAGAGATGGATACTGAAACTGATAAAAATACCGACGCAGTGGCAAAGGCATTAGCAGCAGCAGATGCTCTTGGGAATCAGTCTGCAGATTTTCAAAGGCAGCACAAGGTTGATGATATTGCTAATGGCCTCAAAGAACTTGACATGGATCATTATGATGACGAGGATGAAGGCATTGACATTTTTGGCAGTGGTTCTCTTGGTAATTGTTACTACCCAGCCAATGACATGGACCCTTATATTGTAGAACAAGATGATGATGATGAAGATGAAATCGAAGACATGAGAATTAAACCTTCTGACTTGATTATCTTATCAGCTCGCAATGAAGACGATGTTAGCCATCTTGAGGTCTGGATATATGAAGAAGAAACTGAAGAGGGTGGTTCCAATATGTATGTTCATCATGATATCATCTTGCCAGCCTTTCCACTTTCTCTTGCTTGGCTTGATTGTAATCTGAAAGGTGGAGAAAAAGGAAATTTTGTTGCTGTTGGAACAATGCAACCTGAAATTGAGCTCTGGGACCTTGATGTGCTTGATGAGGTTGAACCTGCTGTAGTCCTGGGTGGTGCTGTTAAAGATGAAGCATCTGGTAAGACGACCAAACTGAAGAAAAAGAAGAAAAATAAACAGGCTGTCAATTTTAAAGAGGGAAGCCATACAGATGCAGTTCTTGGTTTGGCATGGAATATGGAGTACAGGAATGTCTTGGCTAGTGCAAGTGCTGACAAATCTGTAAAGATCTGGGATATTGTTGCTGAGAAATGTGAGCACACAATGCAACCTCACACAGATAAGGTTCAAGCAGTAGCCTGGAATCCTAATCAGGCAACAGTTCTTCTCAGTGGATCTTTTGATCGTTCTGTGATCATGATGGACATGAGGGCTCCCACACACTCAGGGATACGGTGGCCAGTTCCAGCAGATGTAGAAAGCCTTGCATGGGATCCTCATACTGATCACTCATTTATGGTTAGCGCTGAAGATGGCACTGTTCGAGGTTTTGATATTCGTGCAGCAGCATCTACTGCAGATTTTGATGGCAAGCCAATGTTCACACTTCATGCACATGACAAGGCTGTCTGTGCAATTTCGTACAACCCTGCTGCCCCAAGTTTACTCGCAACAGGATCAACAGATAAGATGGTAAAGTTGTGGGACATAACAAATAATCAGCCTTCATGCATTGCCTCAACAAATCCAAATGTTGGAGCTGTGTTTTCTGCAGCTTTTTCAAAAGACAGTCCGTTCTTACTTGCTACTGGAGGCTCAAAGGGAATTTTGCATGTTTGGGATACCCTAGATAATTCTGAAGTCGCGAGAAGATTTGGAAAGTTCAGACCACAGAATTGAACTTTCATATTTCTATTCAGTTTTGTTCGAAGAATAATATCGAGAAAATTTATTTACATATTCTCCAGAGGTGGGATTGTGTATTATAATGTGTTAATACTTGGTCATTTATTTGCGGCTTTTGTTGGCACATTGCTAAATTTCTACGAGCCTTCAGGGACAGGTGTCTAACTGTCCCATCAGTAACATTTCTCGAAGTTTTGCTAAAAGTTAATGTTCTCATAGGTCATTCATTGGAGTTGTCTCGTATGTACGCTGTGCTGTAGTAAAATTCTTTCACGCTTCATTTTGAGTATTTAATGCTGAGTATTTTAAGTTTTTTT

Ace file of the UniGene sp_v1.1_unigene4765

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WD-repeat protein, putative (EC:2.3.1.48)	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	protein	-	-	68%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat	IPR001680	-	68%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	68%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	68%
Blast2go	WD40-repeat-containing domain	IPR017986	-	68%
Blast2go	WD40 repeat, conserved site	IPR019775	-	68%
Blast2go	WD40 repeat, subgroup	IPR019781	-	68%
Blast2go	WD40 repeat 2	IPR019782	-	68%
Blast2go	G-protein beta WD-40 repeat	IPR020472	-	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU52

Fln msg:

Fln protein: MLLGISLQIFKGSTRLMILLMASKNLTWIIMMTRMKALTFLAVVLLVIVTTQPMTWTLIL*

Protein Length: 62

Fln nts: CAACGAAGTCGGAAGAGTAATAAAACTGTATCTCTGGTCACGAAATGGGGATATTGGCTTTTCTACGGGCAAAGTCAATCCAGCTTGAATAGATATCTGAGGCAACCTGCTCCTCCAGCTCGACGATCGTTTGGAAGACCTGTCATCGGGAGCGCTTTACAGATCTCTATCATAAGGTGCAGAATGATTGCAGCAGTGTGTTGGGTTCCTAAGGGTGTTGCAAAGGTTCTACCAGATTCTGCTGAACCGCCTACTCAAGAGGAGATTCAAGAGTTATTGAAGTGTAACGTTGTAGCAGAGAGTGACGATAATGAAGATAGTGATGAAGAAAATGAAGAGATGGATACTGAAACTGATAAAAATACCGACGCAGTGGCAAAGGCATTAGCAGCAGCAG_-_ATGCTCTTGGGAATCAGTCTGCAGATTTTCAAAGGCAGCACAAGGTTGATGATATTGCTAATGGCCTCAAAGAACTTGACATGGATCATTATGATGACGAGGATGAAGGCATTGACATTTTTGGCAGTGGTTCTCTTGGTAATTGTTACTACCCAGCCAATGACATGGACCCTTATATTGTAG___AACAAGATGATGATGATGAAGATGAAATCGAAGACATGAGAATTAAACCTTCTGACTTGATTATCTTATCAGCTCGCAATGAAGACGATGTTAGCCATCTTGAGGTCTGGATATATGAAGAAGAAACTGAAGAGGGTGGTTCCAATATGTATGTTCATCATGATATCATCTTGCCAGCCTTTCCACTTTCTCTTGCTTGGCTTGATTGTAATCTGAAAGGTGGAGAAAAAGGAAATTTTGTTGCTGTTGGAACAATGCAACCTGAAATTGAGCTCTGGGACCTTGATGTGCTTGATGAGGTTGAACCTGCTGTAGTCCTGGGTGGTGCTGTTAAAGATGAAGCATCTGGTAAGACGACCAAACTGAAGAAAAAGAAGAAAAATAAACAGGCTGTCAATTTTAAAGAGGGAAGCCATACAGATGCAGTTCTTGGTTTGGCATGGAATATGGAGTACAGGAATGTCTTGGCTAGTGCAAGTGCTGACAAATCTGTAAAGATCTGGGATATTGTTGCTGAGAAATGTGAGCACACAATGCAACCTCACACAGATAAGGTTCAAGCAGTAGCCTGGAATCCTAATCAGGCAACAGTTCTTCTCAGTGGATCTTTTGATCGTTCTGTGATCATGATGGACATGAGGGCTCCCACACACTCAGGGATACGGTGGCCAGTTCCAGCAGATGTAGAAAGCCTTGCATGGGATCCTCATACTGATCACTCATTTATGGTTAGCGCTGAAGATGGCACTGTTCGAGGTTTTGATATTCGTGCAGCAGCATCTACTGCAGATTTTGATGGCAAGCCAATGTTCACACTTCATGCACATGACAAGGCTGTCTGTGCAATTTCGTACAACCCTGCTGCCCCAAGTTTACTCGCAACAGGATCAACAGATAAGATGGTAAAGTTGTGGGACATAACAAATAATCAGCCTTCATGCATTGCCTCAACAAATCCAAATGTTGGAGCTGTGTTTTCTGCAGCTTTTTCAAAAGACAGTCCGTTCTTACTTGCTACTGGAGGCTCAAAGGGAATTTTGCATGTTTGGGATACCCTAGATAATTCTGAAGTCGCGAGAAGATTTGGAAAGTTCAGACCACAGAATTGAACTTTCATATTTCTATTCAGTTTTGTTCGAAGAATAATATCGAGAAAATTTATTTACATATTCTCCAGAGGTGGGATTGTGTATTATAATGTGTTAATACTTGGTCATTTATTTGCGGCTTTTGTTGGCACATTGCTAAATTTCTACGAGCCTTCAGGGACAGGTGTCTAACTGTCCCATCAGTAACATTTCTCGAAGTTTTGCTAAAAGTTAATGTTCTCATAGGTCATTCATTGGAGTTGTCTCGTATGTACGCTGTGCTGTAGTAAAATTCTTTCACGCTTCATTTTGAGTATTTAATGCTGAGTATTTTAAGTTTTTTT

Fln Alignment:

sp_v1.1_unigene4765___MLLGISLQIFKGSTRLMILLMASKNLTWIIMMTRMKALTFLAVVLLVIVTTQPMTWTLIL
A9NU52______________MLLGINLQISKGSPRLMILLTASKNLTWIIMMTRMKALIFLEVVLLVVVTTQPMTWTLIL

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
967	50		50		1.0
969	50	50			1.0
971	50			50	1.0
972	25			50	0.995533
995	57	42			1.0
997		57		42	1.0
999	57		42		1.0
1003	57	42			1.0
1004			57	42	1.0
1005	57			42	1.0
1006			42	57	1.0
1009	57			42	1.0
1012		42		57	1.0
1015		42		57	1.0
1131		87		12	0.992554
1249	10		90		0.90298
1546		33		66	1.0
1549		33		66	1.0
1553		33	66		1.0
1556			66	33	1.0
1557			33	66	1.0
1559		33		66	1.0
1561			33	66	1.0
1564	33			66	1.0
1567	66			33	1.0
1568		33	66		1.0
1569	33	66			1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
586	599	GAT GAT GAT GAT GA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain