SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4751

Length: 3000 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene4751
ATGGGGAACGAGAGACGTCTCTCCCCAGCTCTGCTTCCTTCTTGCAGGGCTGTCTGTTATTAATAGGGGAGGAGGGATTAATTCCATCCATGGAGCGAGCAGATTCACTGGCAAGTGAAAGGAAAGGGCACAAGCGGAAACTGGGAGAAACCTCGCTGGAGACACTCGAGCCCGTTGACACCAGCAGTCCTCTACCTCAGGACGTCCAAATTCAGGTTAACAAGCTCAATTCTAGCTTCTCATGGCGGGAGGCGGATCGCCTTGTTGCCAGGCGAGCGGCTCACGCGCTTGCAGAGTTCGCCAAACACGAAGAGCACGTCGACATTATTGTGGATGGAGGAGCTATACCTGCTTTGGTTCAACATCTTCAAGCACCTGCAGTTGGTGAGGGAGAGGGACCAATTGCTTGTGAGCACGAGGTTGAAAAGGATGCTGCGTTTGCCTTGGGACTCCTTGCAGTGAAGCCAGAGCATCAACGACTCATTGCAGATGCAGGTGCTCTTTCCTGTCTGGTTTCCTTGTTAAAAAGACGTGGAAATGGTTCGAATGATCGTGCTGTTAATGGTGTCCTTCGAAGAGCTGCTGATGCTATCACAAATCTGGCTCATGAAAATGGCACCATCAAAACTTGCATCAGGACGGAGGGAGGAATTCCTCCTCTAGTTGATTTGCTTGAGTCAACTGATACCAAGGTGCAGCGAGCAGCAGCAGGTGCATTGCGTACTTTAGCATTCAAAAATGAAGCAAACAAGAATCAGATTGTTGAATGCAATGCTCTTCCCACCCTTATTTTCATGTTGCGTTCTGAGGATGTTGGCATCCACTATGAGGCGGTGGGAGTAATTGGGAATTTGGTTCATTCATCTACCAATATAAAGAAAGAAGTTCTTCTTGCTGGAGCTTTACAACCAGTTATTGGTCTGTTGAGTTCACGGTGCCAGGAAAGCCAAAGGGAAGCAGCATTGTTATTAGGGCAGTTTGCAACAACAGATCCTGAATGCAAGGTTCACATTGTCCAACGTGGTGCTGTTCGTCCTCTTTCTAAAATGCTCCAATTGCCAGATGCCCAACTCAAGGAGATGGCAGCATTTGCTCTTGGTAGATTAGCACAGAATTCACACAACCAAGCTGGCATTGTCCATGAAGGGGGACTAATACCGCTTCTTGATCTTCTAGAGTCTAAAAATGGGTCTCTTCAACACAATGCAGCTTTTGCTCTTTATGGGCTTGCAGATAATGAGGATAATATATCTGACATCACAAAGGAGGGAGGTGTTCAAAAGTTACAAGATGTAGAATTGATTGTCCAGGCATCAAAGGACTGTGTTGCCAAGACTTTAAAGAGGATTGAAGAAAAAATTCATGGAAGAGTATTGAAGCACTTACTTTATCTAATGCGTGTATCAGATAAAATTGTTCAAAGACGCGTTGCTTTGGCTCTTGCTCATCTTTGTTGTGTTGATGACCAGAGAATGATCTTCATTGATAACAATGGTTTGGATGTACTACTTGGACTATTGGAGCCTGGTTCAAATTCAAAACAACAACATGATGGTGCTGTAGCATTACATACACTTGCAAAAAGGGCTACTGCCGATTGTCCAATAGATGCCGCTCTTCCGCCTCCAACACCACAGGTATATTTGGGAGAGCAGTATGTCAACAGTCACACTTTATCAGATGTTACCTTTTTAGTGGAAGGTAGGCGATTTTATGCCCACAGGATTGCACTTCTGGCATCTTCAGATGCATTTCGTGCCATGTTTGATGGTGGTTACCGGGAAAAGGAGGCAAAGGATATTGAAATTCCAAACATAACCTGGGCAGTTTTTGAACTGATGATGAGATTTATATACACAGGTACAGTAGAGGTGACAGCAGATATTGCACAAGATCTTCTGAGGGCTGCTGATCAATACCTTTTGGAAGGCCTCAAACGTTTGTGTGAATATTCTATTGCACAGGACCTTACTGTGGAGAATTTTGCAAATATATATGATCTTGCTGAGTCCTATCATGCAACTTCTTTGGGCCATATGTGTGTTCTGTACTTTCTGGAGCACCATGAACAGATGTCTAACATGTCTGGCTACCCTTCCCTTGTGGAACGCTTACTACCAGAGATACGTGATTACTTGTTTAGAATATTAAGGCCACAGCCTTATATGCCTTCACAGTAAAGGAAGTCATGATCATTTGATTGGCTTCTTGGATGGTCTCATCTTCGCTGAGAACTAGTGCAGATAGAGGTATTTTGAAGGTGTTTATCAGCATGCCATGACTACAGCTTGTTATATAAGATGCACTGATTTGTTAAGTGAAATGATTGCGAGACGTCAACTGAATGACACATTCTCAGATCTTTTCAAAATGAACATAAAAGTTTGAAACCAGAGATGAGCCGTCAATTGATATATGACGGTCTTTTGTGTTTCTCTGTCTCATCTAACACTTGAATTTTTTTTCTGTAACAGAAGCTTGACATTTCTACTTTTGTTGTATTCAATGAAATGGTTGATTAGTTCAAGGCTGGAAGACTGATGGTTGGAGGATTAATCTATATGAAGCCTTTGGTTGAAGAAGCCACAGATGGTTTCTTAGCTGAATGCCATATTGTAATGAATAGCATTTTCAGATGTCCTTCTTGTGATTATAACTTGCCCTTCTTCAATTGACAATCAATGACAATTAGGTCTAAGCAAAGGAACAGGCATTCCAATGTCTGTATTTTCTAATGATACTGCTTCTTGTTTTATTTCAACCTGTAAATGTAGCAGGCCTTTTTCTAAGAACTTTGAAGTAAGCATTTGCCAGCTTGAGCCTATAACAGCGTTTTTGGTACATTGTTGTAATTTTAGGTTCGGGCATTGTGTTTTATTTAGTTGTTTAACTGAAGTCTAAACTATTAAGGAAACATAAATCTTTCAACCTGGAATTTTAATCTGTAATGCTCGTTTCTTTTCCATCCTTTCCAAAGTCCAATGTGTTGATTGCATTGAG

Ace file of the UniGene sp_v1.1_unigene4751

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein [Arabidopsis thaliana]	-	-	67%
FL-Next	sp=ARM REPEAT PROTEIN INTERACTING WITH ABF2; Arabidopsis thaliana (Mouse-ear cress).	-	-	70%
Blast2go	protein	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	82%
Blast2go	negative regulation of seed germination	GO:0010187	Biological Process	82%
Blast2go	response to salt stress	GO:0009651	Biological Process	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Blast2go	BTB/POZ-like	IPR000210	-	82%
Blast2go	Armadillo	IPR000225	-	82%
Blast2go	BTB/POZ fold	IPR011333	-	82%
Blast2go	Armadillo-like helical	IPR011989	-	82%
Blast2go	BTB/POZ	IPR013069	-	82%
Blast2go	Armadillo-type fold	IPR016024	-	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: B9DHT4

Fln msg:

Fln protein: MERADSLASERKGHKRKLGETSLETLEPVDTSSPLPQDVQIQVNKLNSSFSWREADRLVARRAAHALAEFAKHEEHVDIIVDGGAIPALVQHLQAPAVGEGEGPIACEHEVEKDAAFALGLLAVKPEHQRLIADAGALSCLVSLLKRRGNGSNDRAVNGVLRRAADAITNLAHENGTIKTCIRTEGGIPPLVDLLESTDTKVQRAAAGALRTLAFKNEANKNQIVECNALPTLIFMLRSEDVGIHYEAVGVIGNLVHSSTNIKKEVLLAGALQPVIGLLSSRCQESQREAALLLGQFATTDPECKVHIVQRGAVRPLSKMLQLPDAQLKEMAAFALGRLAQNSHNQAGIVHEGGLIPLLDLLESKNGSLQHNAAFALYGLADNEDNISDITKEGGVQKLQDVELIVQASKDCVAKTLKRIEEKIHGRVLKHLLYLMRVSDKIVQRRVALALAHLCCVDDQRMIFIDNNGLDVLLGLLEPGSNSKQQHDGAVALHTLAKRATADCPIDAALPPPTPQVYLGEQYVNSHTLSDVTFLVEGRRFYAHRIALLASSDAFRAMFDGGYREKEAKDIEIPNITWAVFELMMRFIYTGTVEVTADIAQDLLRAADQYLLEGLKRLCEYSIAQDLTVENFANIYDLAESYHATSLGHMCVLYFLEHHEQMSNMSGYPSLVERLLPEIRDYLFRILRPQPYMPSQ*

Protein Length: 698

Fln nts: ATGGGGAACGAGAGACGTCTCTCCCCAGCTCTGCTTCCTTCTTGCAGGGCTGTCTGTTATTAATAGGGGAGGAGGGATTAATTCCATCC_-_ATGGAGCGAGCAGATTCACTGGCAAGTGAAAGGAAAGGGCACAAGCGGAAACTGGGAGAAACCTCGCTGGAGACACTCGAGCCCGTTGACACCAGCAGTCCTCTACCTCAGGACGTCCAAATTCAGGTTAACAAGCTCAATTCTAGCTTCTCATGGCGGGAGGCGGATCGCCTTGTTGCCAGGCGAGCGGCTCACGCGCTTGCAGAGTTCGCCAAACACGAAGAGCACGTCGACATTATTGTGGATGGAGGAGCTATACCTGCTTTGGTTCAACATCTTCAAGCACCTGCAGTTGGTGAGGGAGAGGGACCAATTGCTTGTGAGCACGAGGTTGAAAAGGATGCTGCGTTTGCCTTGGGACTCCTTGCAGTGAAGCCAGAGCATCAACGACTCATTGCAGATGCAGGTGCTCTTTCCTGTCTGGTTTCCTTGTTAAAAAGACGTGGAAATGGTTCGAATGATCGTGCTGTTAATGGTGTCCTTCGAAGAGCTGCTGATGCTATCACAAATCTGGCTCATGAAAATGGCACCATCAAAACTTGCATCAGGACGGAGGGAGGAATTCCTCCTCTAGTTGATTTGCTTGAGTCAACTGATACCAAGGTGCAGCGAGCAGCAGCAGGTGCATTGCGTACTTTAGCATTCAAAAATGAAGCAAACAAGAATCAGATTGTTGAATGCAATGCTCTTCCCACCCTTATTTTCATGTTGCGTTCTGAGGATGTTGGCATCCACTATGAGGCGGTGGGAGTAATTGGGAATTTGGTTCATTCATCTACCAATATAAAGAAAGAAGTTCTTCTTGCTGGAGCTTTACAACCAGTTATTGGTCTGTTGAGTTCACGGTGCCAGGAAAGCCAAAGGGAAGCAGCATTGTTATTAGGGCAGTTTGCAACAACAGATCCTGAATGCAAGGTTCACATTGTCCAACGTGGTGCTGTTCGTCCTCTTTCTAAAATGCTCCAATTGCCAGATGCCCAACTCAAGGAGATGGCAGCATTTGCTCTTGGTAGATTAGCACAGAATTCACACAACCAAGCTGGCATTGTCCATGAAGGGGGACTAATACCGCTTCTTGATCTTCTAGAGTCTAAAAATGGGTCTCTTCAACACAATGCAGCTTTTGCTCTTTATGGGCTTGCAGATAATGAGGATAATATATCTGACATCACAAAGGAGGGAGGTGTTCAAAAGTTACAAGATGTAGAATTGATTGTCCAGGCATCAAAGGACTGTGTTGCCAAGACTTTAAAGAGGATTGAAGAAAAAATTCATGGAAGAGTATTGAAGCACTTACTTTATCTAATGCGTGTATCAGATAAAATTGTTCAAAGACGCGTTGCTTTGGCTCTTGCTCATCTTTGTTGTGTTGATGACCAGAGAATGATCTTCATTGATAACAATGGTTTGGATGTACTACTTGGACTATTGGAGCCTGGTTCAAATTCAAAACAACAACATGATGGTGCTGTAGCATTACATACACTTGCAAAAAGGGCTACTGCCGATTGTCCAATAGATGCCGCTCTTCCGCCTCCAACACCACAGGTATATTTGGGAGAGCAGTATGTCAACAGTCACACTTTATCAGATGTTACCTTTTTAGTGGAAGGTAGGCGATTTTATGCCCACAGGATTGCACTTCTGGCATCTTCAGATGCATTTCGTGCCATGTTTGATGGTGGTTACCGGGAAAAGGAGGCAAAGGATATTGAAATTCCAAACATAACCTGGGCAGTTTTTGAACTGATGATGAGATTTATATACACAGGTACAGTAGAGGTGACAGCAGATATTGCACAAGATCTTCTGAGGGCTGCTGATCAATACCTTTTGGAAGGCCTCAAACGTTTGTGTGAATATTCTATTGCACAGGACCTTACTGTGGAGAATTTTGCAAATATATATGATCTTGCTGAGTCCTATCATGCAACTTCTTTGGGCCATATGTGTGTTCTGTACTTTCTGGAGCACCATGAACAGATGTCTAACATGTCTGGCTACCCTTCCCTTGTGGAACGCTTACTACCAGAGATACGTGATTACTTGTTTAGAATATTAAGGCCACAGCCTTATATGCCTTCACAGTAA___AGGAAGTCATGATCATTTGATTGGCTTCTTGGATGGTCTCATCTTCGCTGAGAACTAGTGCAGATAGAGGTATTTTGAAGGTGTTTATCAGCATGCCATGACTACAGCTTGTTATATAAGATGCACTGATTTGTTAAGTGAAATGATTGCGAGACGTCAACTGAATGACACATTCTCAGATCTTTTCAAAATGAACATAAAAGTTTGAAACCAGAGATGAGCCGTCAATTGATATATGACGGTCTTTTGTGTTTCTCTGTCTCATCTAACACTTGAATTTTTTTTCTGTAACAGAAGCTTGACATTTCTACTTTTGTTGTATTCAATGAAATGGTTGATTAGTTCAAGGCTGGAAGACTGATGGTTGGAGGATTAATCTATATGAAGCCTTTGGTTGAAGAAGCCACAGATGGTTTCTTAGCTGAATGCCATATTGTAATGAATAGCATTTTCAGATGTCCTTCTTGTGATTATAACTTGCCCTTCTTCAATTGACAATCAATGACAATTAGGTCTAAGCAAAGGAACAGGCATTCCAATGTCTGTATTTTCTAATGATACTGCTTCTTGTTTTATTTCAACCTGTAAATGTAGCAGGCCTTTTTCTAAGAACTTTGAAGTAAGCATTTGCCAGCTTGAGCCTATAACAGCGTTTTTGGTACATTGTTGTAATTTTAGGTTCGGGCATTGTGTTTTATTTAGTTGTTTAACTGAAGTCTAAACTATTAAGGAAACATAAATCTTTCAACCTGGAATTTTAATCTGTAATGCTCGTTTCTTTTCCATCCTTTCCAAAGTCCAATGTGTTGATTGCATTGAG

Fln Alignment:

sp_v1.1_unigene4751___ERKGHKRKL--GETSLETLE----PVDTSSPLPQDVQIQVNKLNSSFSWREXXXXXXXXXXXXXXXXXXXXXXVDIIVDGGAIPALVQHLQAPAVGEGE-GPIACEHEVEKDAAFALGLLAVKPEHQRLIADAGALSCLVSLLKRRGNGSNDRAVNGVLRRAADAITNLAHENGTIKTCIRTEGGIPPLVDLLESTDTKVQRAAAGALRTLAFKNEANKNQIVECNALPTLIFMLRSEDVGIHYEAVGVIGNLVHSSTNIKKEVLLAGALQPVIGLLSSRCQESQREAALLLGQFATTDPECKVHIVQRGAVRPLSKMLQLPDAQLKEMAAFALGRLAQNSHNQAGIVHEGGLIPLLDLLESKNGSLQHNAAFALYGLADNEDNISDITKEGGVQKLQDVELIVQASKDCVAKTLKRIEEKIHGRVLKHLLYLMRVSDKIVQRRVALALAHLCCVDDQRMIFIXXXXXXXXXXXXEPGS-NSKQQHDGAVALHTLAKRATADCPIDAALPPPTPQVYLGEQYVNSHTLSDVTFLVEGRRFYAHRIALLASSDAFRAMFDGGYREKEAKDIEIPNITWAVFELMMRFIYTGTVEVTADIAQDLLRAADQYLLEGLKRLCEYSIAQDLTVENFANIYDLAESYHATSLGHMCVLYFLEHHEQMSNMSGYPSLVERLLPEIRDYLFRIL
B9DHT4______________ERKGQKRKLEEGAAAVEDREISAVSTDGGQALLSEVAAQVSVLNSAFSWQESDRAAAKRATQVLAELAKNEDLVNVIVDGGAVPALMTHLQAPPYNDGDLAEKPYEHEVEKGSAFALGLLAIKPEYQKLIVDKGALPHLVNLLKRNKDGSSSRAVNSVIRRAADAITNLAHENSSIKTRVRVEGGIPPLVELLEFSDSKVQRAAAGALRTLAFKNDDNKNQIVECNALPTLILMLGSEDAAIHYEAVGVIGNLVHSSPHIKKEVLTAGALQPVIGLLSSCCPESQREAALLLGQFASTDSDCKVHIVQRGAVRPLIEMLQSPDVQLKEMSAFALGRLAQDAHNQAGIAHSGGLGPLLKLLDSRNGSLQHNAAFALYGLADNEDNVSDFIRVGGIQKLQDGEFIVQATKDCVSKTLKRLEEKIHGRVLRHLLYLMRISEKSIQRRVALALAHLCSPEDQRTIFIDDNGLELLLGLL--GSLNTKQQLDGAAALYKLANKSMALSPVDAAPPSPTQRVYLGEQYVNNATLSDVTFLVEGRTFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIKWEVFELMMRFIYTGSVDITNEISKDLLRAADQYLLEGLKRLCEYTIAQDITLESIGDMYELSEAFHAMSLRQACIMFILEHFDKLSSMPWQNELVQRTIPEIREYFCRAL

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
105	80		20		0.995493
156		80		20	0.995493
632	10			90	0.90298
885	88		11		0.923564
918	10			90	0.90298
922			10	90	0.90298
942	87		12		0.992554
948			88	11	0.923564
949		88	11		0.923564
950		88	11		0.923564
951	88		11		0.923564
1099		14		85	0.993533
1597		11		88	0.923564
1851	20			80	0.995493
1867	80			20	0.995493
1871		20	80		0.995493
1872	80			20	0.995493
1873	20		80		0.995493
1874		20	80		0.995493
1875			16	83	0.994512
1878		83		16	0.994512
1879	83	16			0.994512
1881		83	16		0.994512
1884	83		16		0.994512
1939	33		66		0.997452
1967	10		90		0.90298
2033			88	11	0.923564
2065		87		12	0.992554
2122	88		11		0.923564
2261	90	10			0.90298
2262			88	11	0.923564
2364	15	84			0.999986
2417	90	10			0.90298
2418	10			90	0.90298
2419	10			90	0.90298
2458		42		57	1.0
2471	12			87	0.992554
2476		87	12		0.999964
2541	93			6	0.999364
2737		2		91	0.995208
2828	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain