SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4750

Length: 1128 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4750

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein; K01802 peptidylprolyl isomerase [EC:5.2.1.8]	-	-	76%
FL-Next	sp=Probable FKBP-type peptidyl-prolyl cis-trans isomerase 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	76%
Blast2go	protein	-	-	82%

Source	ECs	Term	Type	e value	Identity
AutoFact	Peptidylprolyl isomerase.	EC:5.2.1.8	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	catalytic activity	GO:0003824	Molecular Function	82%
Blast2go	chloroplast thylakoid lumen	GO:0009543	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	0.0	82%
Blast2go	Peptidyl-prolyl cis-trans isomerase, FKBP-type	IPR023566	-	0.0	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O22870

Fln msg:

Fln protein: MAASLTPLGAGLAYATIYDQAKERKLESTKQSLIALCQHSDSQHRRFITRKYHVNVRILNRRDAVRLIGLAAGLCMDLSLMYDARGAGLPPQENAKLCDTTCEKELENAPMITTESGLQYKDIKIGNGPSPPIGFQVAANYVAMVPSGQVFDSSLDKGQPYIFRVGSGQVIKGLDEGLLSMKVGGKRRLYIPGPLAFPKGLNSAPGRPRVAPSSPVIFDVSLEFIPGLESEEE*

Protein Length: 235

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTCTTCCCCAACAAAATAGCTGCGCGTACCACAAAGGTGACAAACGCCGGATTTCTCTTATCAGATTTGTCA_-_ATGGCCGCCTCTCTCACTCCACTGGGTGCAGGCCTGGCTTATGCAACAATTTATGATCAAGCTAAAGAGAGGAAATTGGAATCCACAAAACAGTCCTTGATAGCGCTGTGCCAACATTCTGATTCTCAACATAGAAGATTTATTACTCGAAAATATCATGTGAACGTTCGAATTCTTAATCGAAGAGATGCAGTCAGATTAATTGGTTTAGCAGCTGGACTATGTATGGATCTTTCTCTGATGTATGATGCTAGAGGAGCTGGTTTACCTCCACAAGAAAATGCAAAGTTGTGTGATACAACATGTGAGAAGGAACTTGAAAATGCTCCAATGATCACAACTGAATCTGGTTTACAATACAAGGATATCAAGATTGGGAATGGGCCAAGTCCACCTATTGGATTTCAGGTGGCAGCAAACTATGTAGCAATGGTACCATCCGGACAAGTTTTTGATAGTTCATTGGATAAGGGTCAACCTTACATCTTTCGAGTAGGTTCTGGCCAGGTGATCAAGGGTCTTGATGAAGGCCTTCTGAGCATGAAAGTTGGTGGAAAACGTCGCTTGTACATCCCTGGCCCTCTTGCATTCCCAAAGGGCCTTAACTCTGCTCCAGGAAGGCCGCGGGTAGCACCTAGCAGTCCTGTTATTTTTGACGTGAGTTTGGAGTTCATACCTGGCCTTGAAAGTGAAGAAGAGTAA___ACTGCTTGCATGACAGATTAGCAAGTCAAGTCATTGCGTAGAGGGATGATCACCACAGACTCTTTAGTTTCATTCATTTGATTGATTATTCTTTTCATAAAATTTGTTTCGGTTTTCCTTGTTTGGAAGAAGGCTCTACTGTTTTGAACTTGAAAATATGTTGAAATAGGCTAAATGCACTGTTAATTCTGGACGGATGGAAGGATTTCCTTTCCAATCATTTCCTTGCAACAAAAGAGCTGACCACGGCAAGCTTAAGCATCTGATGAATTATGCCACATGTATATCTTTTCTTAATATAATATATATCAAGCTTTTTTCGTACTGAC

Fln Alignment:

sp_v1.1_unigene4750___NRRDAVRLI-GLAAGLCMDLSLMYDARGAGLPPQENAKLCDTTCEKELENAPMITTESGLQYKDIKIGNGPSPPIGFQVAANYVAMVPSGQVFDSSLDKGQPYIFRVGSGQVIKGLDEGLLSMKVGGKRRLYIPGPLAFPKGLNSAPGRPRVAPSSPVIFDVSLEFIPGLESEEE
O22870______________SRREAMLLVLGVSGGLSMSSLAAY---AAGLPPEDKPRLCEAECEKELENVPMVTTESGLQYKDIKVGRGPSPPVGFQVAANYVAMVPSGQIFDSSLEKGLPYLFRVGSGQVIKGLDEGILSMKAGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSLEFIPGLDSEEE

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
86			25	75	0.996473
88		25		75	0.996473
90	75			25	0.996473
91			75	25	0.996473
92	75		25		0.996473
93			25	75	0.996473
94		25		75	0.996473
100	75	25			0.996473
107		88		11	0.923564
108		88	11		0.923564
111	11			88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain